compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

Dependency Tree

• edu.ucsd.sbrg:EscherConverter:jar:1.2.0

  EscherConverter
  Description: EscherConverter is a stand-alone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats. URL: https://github.com/SBRG/EscherConverter Project License: MIT License

  • junit:junit:jar:4.12 (compile)

    JUnit
    Description: JUnit is a unit testing framework for Java, created by Erich Gamma and Kent Beck. URL: http://junit.org Project License: Eclipse Public License 1.0

    • org.hamcrest:hamcrest-core:jar:1.3 (compile)

      Hamcrest Core
      Description: This is the core API of hamcrest matcher framework to be used by third-party framework providers. This includes the a foundation set of matcher implementations for common operations. URL: https://github.com/hamcrest/JavaHamcrest/hamcrest-core Project License: New BSD License

  • org.apache.maven.surefire:surefire-junit4:jar:2.19.1 (test)

    SureFire JUnit4 Runner
    Description: SureFire JUnit 4.0+ Runner URL: http://maven.apache.org/surefire/surefire-providers/surefire-junit4/ Project License: Apache License, Version 2.0

    • org.apache.maven.surefire:surefire-api:jar:2.19.1 (test)

      SureFire API
      Description: API used in Surefire and Failsafe MOJO, Booter, Common and test framework providers. URL: http://maven.apache.org/surefire/surefire-api/ Project License: Apache License, Version 2.0

  • org.sbml.jsbml:jsbml:jar:1.4 (compile)

    JSBML
    Description: JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. URL: http://www.sbml.org/Software/JSBML Project License: LGPL LicenseLicensing and Distribution Terms for JSBML

    • org.sbml.jsbml:jsbml-core:jar:1.4 (compile)

      jsbml-core
      Description: JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. URL: http://www.sbml.org/Software/JSBML/jsbml-core Project License: LGPL LicenseLicensing and Distribution Terms for JSBML

      • org.apache.logging.log4j:log4j-core:jar:2.3 (compile)

        Apache Log4j Core
        Description: The Apache Log4j Implementation URL: http://logging.apache.org/log4j/2.x/log4j-core/ Project License: The Apache Software License, Version 2.0

        • org.apache.logging.log4j:log4j-api:jar:2.3 (compile)

          Apache Log4j API
          Description: The Apache Log4j API URL: http://logging.apache.org/log4j/2.x/log4j-api/ Project License: The Apache Software License, Version 2.0

      • org.apache.logging.log4j:log4j-1.2-api:jar:2.3 (compile)

        Apache Log4j 1.x Compatibility API
        Description: The Apache Log4j 1.x Compatibility API URL: http://logging.apache.org/log4j/2.x/log4j-1.2-api/ Project License: The Apache Software License, Version 2.0

      • com.fasterxml.woodstox:woodstox-core:jar:5.0.1 (compile)

        Woodstox
        Description: Woodstox is a high-performance XML processor that implements Stax (JSR-173), SAX2 and Stax2 APIs URL: https://github.com/FasterXML/woodstox Project License: The Apache License, Version 2.0

        • org.codehaus.woodstox:stax2-api:jar:3.1.4 (compile)

          Stax2 API
          Description: tax2 API is an extension to basic Stax 1.0 API that adds significant new functionality, such as full-featured bi-direction validation interface and high-performance Typed Access API. URL: http://wiki.fasterxml.com/WoodstoxStax2 Project License: The BSD License

      • org.w3c.jigsaw:jigsaw:jar:2.2.6 (compile)

        W3C Jigsaw
        Description: Jigsaw is W3C's leading-edge Web server platform, providing a sample HTTP 1.1 implementation and a variety of other features on top of an advanced architecture implemented in Java. URL: http://www.w3.org/Jigsaw/ Project License: W3C Software License

      • org.biojava:biojava-ontology:jar:4.0.0 (compile)

        biojava-ontology

        Description: BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics. URL: http://maven.apache.org Project License: GNU LGPL v2

        • org.slf4j:slf4j-api:jar:1.7.10 (compile)

          SLF4J API Module
          Description: The slf4j API URL: http://www.slf4j.org Project License: MIT License

        • org.apache.logging.log4j:log4j-slf4j-impl:jar:2.1 (runtime)

          Apache Log4j SLF4J Binding
          Description: The Apache Log4j SLF4J API binding to Log4j 2 Core URL: http://logging.apache.org/log4j/2.x/log4j-slf4j-impl/ Project License: The Apache Software License, Version 2.0

      • com.thoughtworks.xstream:xstream:jar:1.3.1 (compile)

        XStream Core
        Description: There is currently no description associated with this project. Project License: BSD style

        • xpp3:xpp3_min:jar:1.1.4c (compile)

          MXP1: Xml Pull Parser 3rd Edition (XPP3)
          Description: MXP1 is a stable XmlPull parsing engine that is based on ideas from XPP and in particular XPP2 but completely revised and rewritten to take the best advantage of latest JIT JVMs such as Hotspot in JDK 1.4+. URL: http://www.extreme.indiana.edu/xgws/xsoap/xpp/mxp1/ Project License: Indiana University Extreme! Lab Software License, vesion 1.1.1Public Domain

      • com.fasterxml.staxmate:staxmate:jar:2.3.0 (compile)

        StaxMate

        Description: StaxMate is a light-weight framework that adds convenience to streaming XML-processing without significant additional overhead. It builds on top of a Stax (JSR-173) compliant XML processors such as Woodstox or Sjsxp (default Stax implementation of JDK 1.6) and offers two basic abstractions: Cursors, which build on XMLStreamReaders and Output objects, which build on XMLStreamWriters. URL: http://staxmate.codehaus.org Project License: BSD

    • org.sbml.jsbml.ext:jsbml-arrays:jar:1.4 (compile)

      jsbml-arrays
      Description: JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. URL: http://www.sbml.org/Software/JSBML/ext/jsbml-arrays Project License: LGPL LicenseLicensing and Distribution Terms for JSBML

    • org.sbml.jsbml.ext:jsbml-comp:jar:1.4 (compile)

      jsbml-comp
      Description: JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. URL: http://www.sbml.org/Software/JSBML/ext/jsbml-comp Project License: LGPL LicenseLicensing and Distribution Terms for JSBML

    • org.sbml.jsbml.ext:jsbml-distrib:jar:1.3.1 (compile)

      jsbml-distrib
      Description: JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. URL: http://www.sbml.org/Software/JSBML/ext/jsbml-distrib Project License: LGPL LicenseLicensing and Distribution Terms for JSBML

    • org.sbml.jsbml.ext:jsbml-dyn:jar:1.4 (compile)

      jsbml-dyn
      Description: JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. URL: http://www.sbml.org/Software/JSBML/ext/jsbml-dyn Project License: LGPL LicenseLicensing and Distribution Terms for JSBML

    • org.sbml.jsbml.ext:jsbml-fbc:jar:1.4 (compile)

      jsbml-fbc
      Description: JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. URL: http://www.sbml.org/Software/JSBML/ext/jsbml-fbc Project License: LGPL LicenseLicensing and Distribution Terms for JSBML

    • org.sbml.jsbml.ext:jsbml-groups:jar:1.4 (compile)

      jsbml-groups
      Description: JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. URL: http://www.sbml.org/Software/JSBML/ext/jsbml-groups Project License: LGPL LicenseLicensing and Distribution Terms for JSBML

    • org.sbml.jsbml.ext:jsbml-layout:jar:1.4 (compile)

      jsbml-layout
      Description: JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. URL: http://www.sbml.org/Software/JSBML/ext/jsbml-layout Project License: LGPL LicenseLicensing and Distribution Terms for JSBML

    • org.sbml.jsbml.ext:jsbml-multi:jar:1.4 (compile)

      jsbml-multi
      Description: JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. URL: http://www.sbml.org/Software/JSBML/ext/jsbml-multi Project License: LGPL LicenseLicensing and Distribution Terms for JSBML

    • org.sbml.jsbml.ext:jsbml-qual:jar:1.4 (compile)

      jsbml-qual
      Description: JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. URL: http://www.sbml.org/Software/JSBML/ext/jsbml-qual Project License: LGPL LicenseLicensing and Distribution Terms for JSBML

    • org.sbml.jsbml.ext:jsbml-render:jar:1.4 (compile)

      jsbml-render
      Description: JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. URL: http://www.sbml.org/Software/JSBML/ext/jsbml-render Project License: LGPL LicenseLicensing and Distribution Terms for JSBML

    • org.sbml.jsbml.ext:jsbml-req:jar:1.4 (compile)

      jsbml-req
      Description: JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. URL: http://www.sbml.org/Software/JSBML/ext/jsbml-req Project License: LGPL LicenseLicensing and Distribution Terms for JSBML

    • org.sbml.jsbml.ext:jsbml-spatial:jar:1.4 (compile)

      jsbml-spatial
      Description: JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. URL: http://www.sbml.org/Software/JSBML/ext/jsbml-spatial Project License: LGPL LicenseLicensing and Distribution Terms for JSBML

    • org.sbml.jsbml.modules:jsbml-tidy:jar:1.4 (compile)

      jsbml-tidy
      Description: JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. URL: http://www.sbml.org/Software/JSBML/modules/jsbml-tidy Project License: LGPL LicenseLicensing and Distribution Terms for JSBML

      • net.sf.jtidy:jtidy:jar:r938 (compile)

        JTidy

        Description: JTidy is a Java port of HTML Tidy, a HTML syntax checker and pretty printer. Like its non-Java cousin, JTidy can be used as a tool for cleaning up malformed and faulty HTML. In addition, JTidy provides a DOM interface to the document that is being processed, which effectively makes you able to use JTidy as a DOM parser for real-world HTML. URL: http://jtidy.sourceforge.net Project License: Java HTML Tidy License

  • org:sbgn:jar:0.2 (compile)

    sbgn
    Description: There is currently no description associated with this project. Project License: No license is defined for this project.

  • com.googlecode.json-simple:json-simple:jar:1.1.1 (compile)

    JSON.simple
    Description: A simple Java toolkit for JSON URL: http://code.google.com/p/json-simple/ Project License: The Apache Software License, Version 2.0

  • de.zbit:SysBio:jar:1403 (compile)

    SysBio
    Description: There is currently no description associated with this project. Project License: No license is defined for this project.

  • ch.randelshofer:quaqua:jar:9 (compile)

    quaqua
    Description: There is currently no description associated with this project. Project License: No license is defined for this project.

  • com.fasterxml.jackson.core:jackson-core:jar:2.7.4 (compile)

    Jackson-core
    Description: Core Jackson abstractions, basic JSON streaming API implementation URL: https://github.com/FasterXML/jackson-core Project License: The Apache Software License, Version 2.0

  • com.fasterxml.jackson.core:jackson-annotations:jar:2.7.4 (compile)

    Jackson-annotations
    Description: Core annotations used for value types, used by Jackson data binding package. URL: http://github.com/FasterXML/jackson Project License: The Apache Software License, Version 2.0

  • com.github.fge:json-schema-validator:jar:2.2.6 (compile)

    null
    Description: null URL: https://github.com/fge/json-schema-validator Project License: Lesser General Public License, version 3 or greaterApache Software License, version 2.0

    • com.google.code.findbugs:jsr305:jar:3.0.0 (compile)

      FindBugs-jsr305
      Description: JSR305 Annotations for Findbugs URL: http://findbugs.sourceforge.net/ Project License: The Apache Software License, Version 2.0

    • joda-time:joda-time:jar:2.3 (compile)

      Joda-Time
      Description: Date and time library to replace JDK date handling URL: http://www.joda.org/joda-time/ Project License: Apache 2

    • com.googlecode.libphonenumber:libphonenumber:jar:6.2 (compile)

      libphonenumber
      Description: Google's common Java library for parsing, formatting, storing and validating international phone numbers. Optimized for running on smartphones. URL: http://code.google.com/p/libphonenumber/ Project License: The Apache Software License, Version 2.0

    • com.github.fge:json-schema-core:jar:1.2.5 (compile)

      null
      Description: null URL: https://github.com/fge/json-schema-core Project License: Lesser General Public License, version 3 or greaterApache Software License, version 2.0

      • com.github.fge:uri-template:jar:0.9 (compile)

        null
        Description: null URL: https://github.com/fge/uri-template Project License: Lesser General Public License, version 3 or greaterApache Software License, version 2.0

        • com.github.fge:msg-simple:jar:1.1 (compile)

          null
          Description: null URL: https://github.com/fge/msg-simple Project License: Lesser General Public License, version 3 or greaterApache Software License, version 2.0

          • com.github.fge:btf:jar:1.2 (compile)

            null
            Description: null URL: https://github.com/fge/btf Project License: Lesser General Public License, version 3 or greaterApache Software License, version 2.0

        • com.google.guava:guava:jar:16.0.1 (compile)

          Guava: Google Core Libraries for Java
          Description: Guava is a suite of core and expanded libraries that include utility classes, google's collections, io classes, and much much more. Guava has only one code dependency - javax.annotation, per the JSR-305 spec. URL: http://code.google.com/p/guava-libraries/guava Project License: The Apache Software License, Version 2.0

      • com.github.fge:jackson-coreutils:jar:1.8 (compile)

        null
        Description: null URL: https://github.com/fge/jackson-coreutils Project License: Lesser General Public License, version 3 or greaterApache Software License, version 2.0

        • com.fasterxml.jackson.core:jackson-databind:jar:2.2.3 (compile)

          jackson-databind
          Description: General data-binding functionality for Jackson: works on core streaming API URL: http://wiki.fasterxml.com/JacksonHome Project License: The Apache Software License, Version 2.0GNU Lesser General Public License, Version 2.1

      • org.mozilla:rhino:jar:1.7R4 (compile)

        Mozilla Rhino
        Description: Rhino is an open-source implementation of JavaScript written entirely in Java. It is typically embedded into Java applications to provide scripting to end users. URL: https://developer.mozilla.org/en/Rhino Project License: Mozilla Public License, Version 2.0

    • javax.mail:mailapi:jar:1.4.3 (compile)

      JavaMail API jar
      Description: JavaMail API jar URL: http://java.sun.com/projects/javamail/mailapi Project License: CDDLGPLv2+CE

      • javax.activation:activation:jar:1.1 (compile)

        JavaBeans Activation Framework (JAF)

        Description: JavaBeans Activation Framework (JAF) is a standard extension to the Java platform that lets you take advantage of standard services to: determine the type of an arbitrary piece of data; encapsulate access to it; discover the operations available on it; and instantiate the appropriate bean to perform the operation(s). URL: http://java.sun.com/products/javabeans/jaf/index.jsp Project License: Common Development and Distribution License (CDDL) v1.0

    • net.sf.jopt-simple:jopt-simple:jar:4.6 (compile)

      JOpt Simple
      Description: A Java library for parsing command line options URL: http://pholser.github.com/jopt-simple Project License: The MIT License

  • org.mockito:mockito-all:jar:1.10.19 (test)

    Mockito
    Description: Mock objects library for java URL: http://www.mockito.org Project License: The MIT License

  • org.powermock:powermock-module-junit4:jar:1.6.5 (test)

    powermock-module-junit4
    Description: PowerMock support module for JUnit 4.x. URL: http://www.powermock.org Project License: The Apache Software License, Version 2.0

    • org.powermock:powermock-module-junit4-common:jar:1.6.5 (test)

      powermock-module-junit4-common
      Description: PowerMock support module for all versions of JUnit 4.x. URL: http://www.powermock.org/powermock-modules/powermock-module-junit4-common Project License: The Apache Software License, Version 2.0

      • org.powermock:powermock-core:jar:1.6.5 (test)

        powermock-core
        Description: PowerMock core functionality. URL: http://www.powermock.org Project License: The Apache Software License, Version 2.0

        • org.javassist:javassist:jar:3.20.0-GA (test)

          Javassist
          Description: Javassist (JAVA programming ASSISTant) makes Java bytecode manipulation simple. It is a class library for editing bytecodes in Java. URL: http://www.javassist.org/ Project License: MPL 1.1LGPL 2.1Apache License 2.0

      • org.powermock:powermock-reflect:jar:1.6.5 (test)

        powermock-reflect
        Description: Various utilities for accessing internals of a class. URL: http://www.powermock.org/powermock-reflect Project License: The Apache Software License, Version 2.0

  • org.powermock:powermock-api-mockito:jar:1.6.5 (test)

    powermock-api-mockito
    Description: PowerMock API for Mockito 1.+. URL: http://www.powermock.org/powermock-api/powermock-api-mockito Project License: The Apache Software License, Version 2.0

    • org.mockito:mockito-core:jar:1.10.19 (test)

      Mockito
      Description: Mock objects library for java URL: http://www.mockito.org Project License: The MIT License

      • org.objenesis:objenesis:jar:2.1 (test)

        Objenesis
        Description: A library for instantiating Java objects URL: http://objenesis.org Project License: Apache 2

    • org.powermock:powermock-api-mockito-common:jar:1.6.5 (test)

      powermock-api-mockito-common
      Description: PowerMock API for Mockito. Common Part. URL: http://www.powermock.org/powermock-api/powermock-api-mockito-common Project License: The Apache Software License, Version 2.0

      • org.powermock:powermock-api-support:jar:1.6.5 (test)

        powermock-api-support
        Description: Utility classes. URL: http://www.powermock.org/powermock-api/powermock-api-support Project License: The Apache Software License, Version 2.0

  • pl.pragmatists:JUnitParams:jar:1.0.5 (test)

    JUnitParams
    Description: Better parameterised tests for JUnit URL: https://github.com/Pragmatists/JUnitParams Project License: Apache 2

  • org.jdom:jdom:jar:1.1.3 (compile)

    JDOM
    Description: A complete, Java-based solution for accessing, manipulating, and outputting XML data URL: http://www.jdom.org Project License: Similar to Apache License but with the acknowledgment clause removed