Package de.uni_halle.informatik.biodata.mp.annotation.bigg.ext.fbc

Class BiGGFBCSpeciesAnnotator

java.lang.Object

de.uni_halle.informatik.biodata.mp.annotation.AbstractAnnotator

de.uni_halle.informatik.biodata.mp.annotation.bigg.AbstractBiGGAnnotator

de.uni_halle.informatik.biodata.mp.annotation.bigg.ext.fbc.BiGGFBCSpeciesAnnotator

All Implemented Interfaces:

IAnnotateSBases<org.sbml.jsbml.Species>, IReportDiffs, IReportStatus

public class BiGGFBCSpeciesAnnotator
extends AbstractBiGGAnnotator
implements IAnnotateSBases<org.sbml.jsbml.Species>

Field Summary

Fields inherited from class de.uni_halle.informatik.biodata.mp.annotation.bigg.AbstractBiGGAnnotator

bigg, biGGAnnotationParameters, registry

Constructor Summary

Constructors

Constructor	Description
BiGGFBCSpeciesAnnotator(BiGGDB bigg, BiGGAnnotationParameters biGGAnnotationParameters, Registry registry)

Method Summary

Modifier and Type	Method	Description
void	annotate(org.sbml.jsbml.Species species)
BiGGId	findBiGGId(org.sbml.jsbml.Species species)

Methods inherited from class de.uni_halle.informatik.biodata.mp.annotation.bigg.AbstractBiGGAnnotator

getBiGGIdFromResources

Methods inherited from class de.uni_halle.informatik.biodata.mp.annotation.AbstractAnnotator

diffReport, getObservers, statusReport

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface de.uni_halle.informatik.biodata.mp.annotation.IAnnotateSBases

annotate

Constructor Details

BiGGFBCSpeciesAnnotator

public BiGGFBCSpeciesAnnotator(BiGGDB bigg,
 BiGGAnnotationParameters biGGAnnotationParameters,
 Registry registry)

Method Details

annotate

public void annotate(org.sbml.jsbml.Species species)
              throws SQLException

Specified by:

annotate in interface IAnnotateSBases<org.sbml.jsbml.Species>

Throws:

SQLException

findBiGGId

public BiGGId findBiGGId(org.sbml.jsbml.Species species)
                  throws SQLException

Throws:

SQLException