Package de.uni_halle.informatik.biodata.mp.db.adb

Class AnnotateDB

java.lang.Object

de.uni_halle.informatik.biodata.mp.db.adb.AnnotateDB

public class AnnotateDB
extends Object

Constructor Summary

Constructors

Constructor	Description
AnnotateDB()

Method Summary

Modifier and Type	Method	Description
Set<String>	getAnnotations(String type, String biggId)	Retrieves a set of annotated URLs based on the type and BiGG ID provided.
static void	init(DBParameters parameters)
static void	init(String host, Integer port, String user, String passwd, String dbName)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

AnnotateDB

public AnnotateDB()

Method Details

init

public static void init(DBParameters parameters)

init

public static void init(String host,
 Integer port,
 String user,
 String passwd,
 String dbName)

getAnnotations

public Set<String> getAnnotations(String type,
 String biggId)
                           throws SQLException

Retrieves a set of annotated URLs based on the type and BiGG ID provided. This method queries the database to find matching annotations and constructs URLs using the retrieved data.

Parameters:

type - The type of the BiGG ID, which can be either a metabolite or a reaction.

biggId - The BiGG ID for which annotations are to be retrieved. The ID may be modified if it starts with specific prefixes or ends with an underscore.

Returns:

A sorted set of URLs that are annotations for the given BiGG ID. If the type is neither metabolite nor reaction, or if an SQL exception occurs, an empty set is returned.

Throws:

SQLException