Package de.uni_halle.informatik.biodata.mp.io.parsers.cobra

Class ReactionParser

java.lang.Object

de.uni_halle.informatik.biodata.mp.io.parsers.cobra.ReactionParser

public class ReactionParser
extends Object

Constructor Summary

Constructors

Constructor	Description
ReactionParser(org.sbml.jsbml.util.ModelBuilder builder, int index, Registry registry)

Method Summary

Modifier and Type	Method	Description
boolean	addResource(String resource, org.sbml.jsbml.CVTerm term, String prefix)	Tries to update a resource according to pre-defined rules.
void	parse()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ReactionParser

public ReactionParser(org.sbml.jsbml.util.ModelBuilder builder,
 int index,
 Registry registry)

Method Details

parse

public void parse()

addResource

public boolean addResource(String resource,
 org.sbml.jsbml.CVTerm term,
 String prefix)

Tries to update a resource according to pre-defined rules. If the resource starts with the MIRIAM name followed by a colon, its value is added to the given term. This method assumes that there is a colon between catalog id and resource id. If this is not the case, false will be returned.

Returns:

true if successful, false otherwise.