Package de.uni_halle.informatik.biodata.mp.io.parsers.json

Class JSONConverter

java.lang.Object

de.uni_halle.informatik.biodata.mp.io.parsers.json.JSONConverter

public class JSONConverter
extends Object

Constructor Summary

Constructors

Constructor	Description
JSONConverter()

Method Summary

Modifier and Type	Method	Description
static Gene	convertGene(org.sbml.jsbml.ext.fbc.GeneProduct g)
static List<Gene>	convertGenes(org.sbml.jsbml.Model model)
static Metabolite	convertMetabolite(org.sbml.jsbml.Species species)
static List<Metabolite>	convertMetabolites(org.sbml.jsbml.Model model)
static Root	convertModel(org.sbml.jsbml.Model model)
static Reaction	convertReaction(org.sbml.jsbml.Reaction r)
static List<Reaction>	convertReactions(org.sbml.jsbml.Model model)
static String	getJSONDocument(org.sbml.jsbml.SBMLDocument doc)
static String	getJSONModel(org.sbml.jsbml.Model model)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

JSONConverter

public JSONConverter()

Method Details

convertModel

public static Root convertModel(org.sbml.jsbml.Model model)
                         throws XMLStreamException

Throws:

XMLStreamException

convertGenes

public static List<Gene> convertGenes(org.sbml.jsbml.Model model)
                               throws XMLStreamException

Throws:

XMLStreamException

convertGene

public static Gene convertGene(org.sbml.jsbml.ext.fbc.GeneProduct g)
                        throws XMLStreamException

Throws:

XMLStreamException

convertMetabolites

public static List<Metabolite> convertMetabolites(org.sbml.jsbml.Model model)
                                           throws XMLStreamException

Throws:

XMLStreamException

convertMetabolite

public static Metabolite convertMetabolite(org.sbml.jsbml.Species species)
                                    throws XMLStreamException

Throws:

XMLStreamException

convertReactions

public static List<Reaction> convertReactions(org.sbml.jsbml.Model model)
                                       throws XMLStreamException

Throws:

XMLStreamException

convertReaction

public static Reaction convertReaction(org.sbml.jsbml.Reaction r)
                                throws XMLStreamException

Throws:

XMLStreamException

getJSONDocument

public static String getJSONDocument(org.sbml.jsbml.SBMLDocument doc)
                              throws com.fasterxml.jackson.core.JsonProcessingException,
XMLStreamException

Throws:

com.fasterxml.jackson.core.JsonProcessingException

XMLStreamException

getJSONModel

public static String getJSONModel(org.sbml.jsbml.Model model)
                           throws com.fasterxml.jackson.core.JsonProcessingException,
XMLStreamException

Throws:

com.fasterxml.jackson.core.JsonProcessingException

XMLStreamException