Package de.uni_halle.informatik.biodata.mp.polishing

Class AnnotationPolisher

java.lang.Object

de.uni_halle.informatik.biodata.mp.polishing.AbstractPolisher

de.uni_halle.informatik.biodata.mp.polishing.AnnotationPolisher

All Implemented Interfaces:

IPolishAnnotations, IReportStatus

public class AnnotationPolisher
extends AbstractPolisher
implements IPolishAnnotations

Field Summary

Fields inherited from class de.uni_halle.informatik.biodata.mp.polishing.AbstractPolisher

polishingParameters, registry

Constructor Summary

Constructors

Constructor	Description
AnnotationPolisher(PolishingParameters polishingParameters, Registry registry)
AnnotationPolisher(PolishingParameters polishingParameters, Registry registry, List<ProgressObserver> observers)

Method Summary

Modifier and Type	Method	Description
void	polish(org.sbml.jsbml.Annotation annotation)	Processes the annotations of an SBML entity to potentially correct identifiers and/or retrieve additional identifiers.org URLs.

Methods inherited from class de.uni_halle.informatik.biodata.mp.polishing.AbstractPolisher

equals, getObservers, hashCode, statusReport, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

AnnotationPolisher

public AnnotationPolisher(PolishingParameters polishingParameters,
 Registry registry)

AnnotationPolisher

public AnnotationPolisher(PolishingParameters polishingParameters,
 Registry registry,
 List<ProgressObserver> observers)

Method Details

polish

public void polish(org.sbml.jsbml.Annotation annotation)

Processes the annotations of an SBML entity to potentially correct identifiers and/or retrieve additional identifiers.org URLs. This method iterates over all Controlled Vocabulary (CV) Terms in the provided Annotation object. For each resource URL in a CV Term, it checks and possibly corrects the URL or adds new URLs from identifiers.org. It then updates the CV Term with the corrected and/or additional URLs.

Specified by:

polish in interface IPolishAnnotations

Parameters:

annotation - The Annotation object associated with an SBML entity that contains CV Terms to be processed.