Package de.uni_halle.informatik.biodata.mp.polishing

Class SBMLPolisher

java.lang.Object

de.uni_halle.informatik.biodata.mp.polishing.AbstractPolisher

de.uni_halle.informatik.biodata.mp.polishing.SBMLPolisher

All Implemented Interfaces:

IPolishSBases<org.sbml.jsbml.SBMLDocument>, IReportStatus

public class SBMLPolisher
extends AbstractPolisher
implements IPolishSBases<org.sbml.jsbml.SBMLDocument>

Field Summary

Fields inherited from class de.uni_halle.informatik.biodata.mp.polishing.AbstractPolisher

polishingParameters, registry

Constructor Summary

Constructors

Constructor	Description
SBMLPolisher(PolishingParameters parameters, SBOParameters sboParameters, Registry registry)
SBMLPolisher(PolishingParameters parameters, SBOParameters sboParameters, Registry registry, List<ProgressObserver> observers)

Method Summary

Modifier and Type	Method	Description
void	polish(org.sbml.jsbml.SBMLDocument doc)	This method serves as the entry point from the ModelPolisher class to polish an SBML document.

Methods inherited from class de.uni_halle.informatik.biodata.mp.polishing.AbstractPolisher

equals, getObservers, hashCode, statusReport, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface de.uni_halle.informatik.biodata.mp.polishing.IPolishSBases

polish

Constructor Details

SBMLPolisher

public SBMLPolisher(PolishingParameters parameters,
 SBOParameters sboParameters,
 Registry registry)

SBMLPolisher

public SBMLPolisher(PolishingParameters parameters,
 SBOParameters sboParameters,
 Registry registry,
 List<ProgressObserver> observers)

Method Details

polish

public void polish(org.sbml.jsbml.SBMLDocument doc)

This method serves as the entry point from the ModelPolisher class to polish an SBML document. It ensures the document contains a model, performs a sanity check, polishes the model, sets the SBO term, marks the progress as finished if applicable, and processes any linked resources.

Specified by:

polish in interface IPolishSBases<org.sbml.jsbml.SBMLDocument>

Parameters:

doc - The SBMLDocument containing the model to be polished.