fern.analysis

Class ShortestPath.Path

java.lang.Object

fern.analysis.ShortestPath.Path

Enclosing class:

ShortestPath

public class ShortestPath.Path
extends Object

Encapsulates a path from one species to another.

Author:

Florian Erhard

Constructor Summary

Constructors

Constructor and Description
Path(int[] path) Creates a path from an array.

Method Summary

Modifier and Type	Method and Description
int[]	getRawData() Returns the raw path: Is ends with a species index and is composed of alternating indices of species and reactions.
int[]	getReactions() Returns all the reactions on this path.
int[]	getSpecies() Returns all the species on this path.
String	toString()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Path

public Path(int[] path)

Creates a path from an array. The array has to end with a species and has to be composed of alternating indices of species and reactions.

Parameters:

path - Arrays containing the network indices of the path's components

Method Detail

getRawData

public int[] getRawData()

Returns the raw path: Is ends with a species index and is composed of alternating indices of species and reactions.

Returns:

Raw path of alternating indices of species and reactions ending at a species index.

getSpecies

public int[] getSpecies()

Returns all the species on this path.

Returns:

Indices of the species.

getReactions

public int[] getReactions()

Returns all the reactions on this path.

Returns:

Indices of the reactions.

toString

public String toString()

Overrides:

toString in class Object