fern.example

Class HistogramDistanceTestSet

java.lang.Object

fern.example.HistogramDistanceTestSet

public class HistogramDistanceTestSet
extends Object

Encapsulate test sets for histogram distance calculations.

Author:

Florian Erhard

Constructor Summary

Constructors

Constructor and Description
HistogramDistanceTestSet(Simulator sim, double eps, int runs, double time, String species)

Method Summary

Modifier and Type	Method and Description
void	createHistogram()
double	getEpsilon()
File	getFile()
double[][]	getHistoAsParallelArray()
Map<Integer,Integer>	getHistogram()
Simulator	getSimulator()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

HistogramDistanceTestSet

public HistogramDistanceTestSet(Simulator sim,
                                double eps,
                                int runs,
                                double time,
                                String species)

Method Detail

createHistogram

public void createHistogram()
                     throws IOException

Throws:

IOException

getHistoAsParallelArray

public double[][] getHistoAsParallelArray()

getFile

public File getFile()

getHistogram

public Map<Integer,Integer> getHistogram()

getEpsilon

public double getEpsilon()

getSimulator

public Simulator getSimulator()