fern.simulation.observer

Class AmountIntervalObserver

java.lang.Object

fern.simulation.observer.Observer

fern.simulation.observer.IntervalObserver

fern.simulation.observer.AmountIntervalObserver

All Implemented Interfaces:

GnuPlotObserver

public class AmountIntervalObserver
extends IntervalObserver

Observes amounts of molecule species repeatedly after certain intervals.

This observer does take repeats into account. If you repeat the simulation, you will get an average over the results of each run.

Author:

Florian Erhard

Constructor Summary

Constructors

Constructor and Description
AmountIntervalObserver(Simulator sim, double interval, int... species) Creates the observer for a given simulator, a given interval and given species indices
AmountIntervalObserver(Simulator sim, double interval, int duration, String... speciesName) Creates the observer for a given simulator, a given interval and given species names with total simulation time.
AmountIntervalObserver(Simulator sim, double interval, String... speciesName) Creates the observer for a given simulator, a given interval and given species names.

Method Summary

Modifier and Type	Method and Description
String[]	getStyles() Gets the styles for the columns.

Methods inherited from class fern.simulation.observer.IntervalObserver

activateReaction, finished, getAvgLog, getFinalValue, getRecentData, isPlotQuality, isThetaMethod, setPlotQuality, setThetaMethod, started, step, theta, toGnuplot, toGnuplot, toGnuplotRecent, toGnuplotRecent, toString

Methods inherited from class fern.simulation.observer.Observer

getLabelFormat, getNumSimulations, getPrintWriter, getSimulator, getTheta, print, setLabelFormat, setPrintWriter, setTheta

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

AmountIntervalObserver

public AmountIntervalObserver(Simulator sim,
                              double interval,
                              int... species)

Creates the observer for a given simulator, a given interval and given species indices

Parameters:

sim - simulator

interval - interval

species - species indices

AmountIntervalObserver

public AmountIntervalObserver(Simulator sim,
                              double interval,
                              String... speciesName)

Creates the observer for a given simulator, a given interval and given species names.

Parameters:

sim - simulator

interval - interval

speciesName - species names

AmountIntervalObserver

public AmountIntervalObserver(Simulator sim,
                              double interval,
                              int duration,
                              String... speciesName)

Creates the observer for a given simulator, a given interval and given species names with total simulation time.

Parameters:

sim -

interval -

duration -

speciesName -

Method Detail

getStyles

public String[] getStyles()

Description copied from interface: GnuPlotObserver

Gets the styles for the columns. If you don't want styles, just return null!

Returns:

styles for the columns