org.simulator.math.odes

Class AdamsMoultonSolver

java.lang.Object

org.simulator.math.odes.AbstractDESSolver

org.simulator.math.odes.AdaptiveStepsizeIntegrator

org.simulator.math.odes.FirstOrderSolver

org.simulator.math.odes.AdamsMoultonSolver

All Implemented Interfaces:

Serializable, Cloneable, org.apache.commons.math.ode.events.EventHandler, DelayValueHolder, DESSolver

public class AdamsMoultonSolver
extends FirstOrderSolver

This class is a wrapper for the Adams-Moulton solver in the Apache Math Library.

Since:

0.9

Version:

$Rev$

Author:

Roland Keller

See Also:

Serialized Form

Field Summary

Fields inherited from class org.simulator.math.odes.AbstractDESSolver

PROGRESS, RESULT

Fields inherited from interface org.apache.commons.math.ode.events.EventHandler

CONTINUE, RESET_DERIVATIVES, RESET_STATE, STOP

Constructor Summary

Constructors

Constructor and Description
AdamsMoultonSolver()
AdamsMoultonSolver(AdamsMoultonSolver adamsSolver) clone constructor
AdamsMoultonSolver(double stepSize)
AdamsMoultonSolver(double stepSize, boolean nonnegative)

Method Summary

Modifier and Type	Method and Description
AdamsMoultonSolver	clone()
int	getKiSAOterm() For details about the Kinetic Simulation Algorithm Ontology (KiSAO) see http://biomodels.net/kisao/.
String	getName() This gives a human-readable name of this solver that can be displayed in a graphical user interface.

Methods inherited from class org.simulator.math.odes.FirstOrderSolver

computeChange, getIntegrator, setStepSize

Methods inherited from class org.simulator.math.odes.AdaptiveStepsizeIntegrator

getAbsTol, getRelTol, setAbsTol, setRelTol

Methods inherited from class org.simulator.math.odes.AbstractDESSolver

addPropertyChangeListener, computeDelayedValue, eventOccurred, firePropertyChange, g, getSerialversionuid, getStepSize, inBetweenSteps, isIncludeIntermediates, isNonnegative, isUnstable, processEvents, processEventsAndRules, processRules, removePropertyChangeListener, reset, resetState, setIncludeIntermediates, setNonnegative, setUnstableFlag, solve, solve, solve, solve, solve, solve, solve, solve, steadystate

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AdamsMoultonSolver

public AdamsMoultonSolver()

AdamsMoultonSolver

public AdamsMoultonSolver(AdamsMoultonSolver adamsSolver)

clone constructor

Parameters:

adamsSolver -

AdamsMoultonSolver

public AdamsMoultonSolver(double stepSize)

Parameters:

stepSize -

AdamsMoultonSolver

public AdamsMoultonSolver(double stepSize,
                          boolean nonnegative)

Parameters:

stepSize -

nonnegative - the nonnegative flag of the super class

See Also:

AbstractDESSolver

Method Detail

clone

public AdamsMoultonSolver clone()

Description copied from class: AbstractDESSolver

Specified by:

clone in interface DESSolver

Specified by:

clone in class FirstOrderSolver

Returns:

the cloned solver

getName

public String getName()

Description copied from class: AbstractDESSolver

This gives a human-readable name of this solver that can be displayed in a graphical user interface.

Specified by:

getName in class AbstractDESSolver

Returns:

A name that describes the underlying algorithm.

getKiSAOterm

public int getKiSAOterm()

Description copied from interface: DESSolver

For details about the Kinetic Simulation Algorithm Ontology (KiSAO) see http://biomodels.net/kisao/.

Returns:

the KiSAO term of the algorithm