org.simulator.math.odes

Class RungeKutta_EventSolver

java.lang.Object

org.simulator.math.odes.AbstractDESSolver

org.simulator.math.odes.RungeKutta_EventSolver

All Implemented Interfaces:

Serializable, Cloneable, org.apache.commons.math.ode.events.EventHandler, DelayValueHolder, DESSolver

public class RungeKutta_EventSolver
extends AbstractDESSolver

Runge-Kutta method.

Since:

0.9

Version:

$Rev$

Author:

Andreas Dräger

See Also:

Serialized Form

Field Summary

Fields inherited from class org.simulator.math.odes.AbstractDESSolver

PROGRESS, RESULT

Fields inherited from interface org.apache.commons.math.ode.events.EventHandler

CONTINUE, RESET_DERIVATIVES, RESET_STATE, STOP

Constructor Summary

Constructors

Constructor and Description
RungeKutta_EventSolver() default constructor
RungeKutta_EventSolver(double stepSize)
RungeKutta_EventSolver(double stepSize, boolean nonnegative)
RungeKutta_EventSolver(RungeKutta_EventSolver rkEventSolver) clone constructor

Method Summary

Modifier and Type	Method and Description
RungeKutta_EventSolver	clone()
double[]	computeChange(DESystem DES, double[] yTemp, double t, double h, double[] change, boolean steadyState) Computes the change for a given system at the current time with the current setting for the integration step size.
int	getKiSAOterm() For details about the Kinetic Simulation Algorithm Ontology (KiSAO) see http://biomodels.net/kisao/.
String	getName() This gives a human-readable name of this solver that can be displayed in a graphical user interface.

Methods inherited from class org.simulator.math.odes.AbstractDESSolver

addPropertyChangeListener, computeDelayedValue, eventOccurred, firePropertyChange, g, getSerialversionuid, getStepSize, inBetweenSteps, isIncludeIntermediates, isNonnegative, isUnstable, processEvents, processEventsAndRules, processRules, removePropertyChangeListener, reset, resetState, setIncludeIntermediates, setNonnegative, setStepSize, setUnstableFlag, solve, solve, solve, solve, solve, solve, solve, solve, steadystate

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RungeKutta_EventSolver

public RungeKutta_EventSolver()

default constructor

RungeKutta_EventSolver

public RungeKutta_EventSolver(double stepSize)

Parameters:

stepSize -

RungeKutta_EventSolver

public RungeKutta_EventSolver(double stepSize,
                              boolean nonnegative)

Parameters:

stepSize -

nonnegative - the nonnegative flag of the super class

See Also:

AbstractDESSolver

RungeKutta_EventSolver

public RungeKutta_EventSolver(RungeKutta_EventSolver rkEventSolver)

clone constructor

Parameters:

rkEventSolver -

Method Detail

computeChange

public double[] computeChange(DESystem DES,
                              double[] yTemp,
                              double t,
                              double h,
                              double[] change,
                              boolean steadyState)
                       throws org.apache.commons.math.ode.DerivativeException

Description copied from class: AbstractDESSolver

Computes the change for a given system at the current time with the current setting for the integration step size.

Specified by:

computeChange in class AbstractDESSolver

Parameters:

DES - The system to be simulated.

yTemp - The current state of the system.

t - The current simulation time.

h - The current integration step size.

change - The vector for the resulting change of the system.

Returns:

The change.

Throws:

org.apache.commons.math.ode.DerivativeException

getName

public String getName()

Description copied from class: AbstractDESSolver

This gives a human-readable name of this solver that can be displayed in a graphical user interface.

Specified by:

getName in class AbstractDESSolver

Returns:

A name that describes the underlying algorithm.

clone

public RungeKutta_EventSolver clone()

Description copied from class: AbstractDESSolver

Specified by:

clone in interface DESSolver

Specified by:

clone in class AbstractDESSolver

Returns:

the cloned solver

getKiSAOterm

public int getKiSAOterm()

Description copied from interface: DESSolver

For details about the Kinetic Simulation Algorithm Ontology (KiSAO) see http://biomodels.net/kisao/.

Returns:

the KiSAO term of the algorithm