Uses of Class
org.simulator.math.odes.MultiTable

Packages that use MultiTable

Package	Description
org.simulator.comp
org.simulator.io	Import and export of files.
org.simulator.math	Classes that contain several mathematical operations.
org.simulator.math.odes	The various solver classes that are all derived from AbstractDESSolver.
org.simulator.plot
org.simulator.sedml	Classes for reading and executing SED-ML files.

Uses of MultiTable in org.simulator.comp

Methods in org.simulator.comp that return MultiTable

Modifier and Type	Method and Description
MultiTable	CompSimulator.solve(double timeEnd, double stepSize) This method initializes the RosenbrockSolver and passes it to solve the flattened model.
MultiTable	CompSimulator.solve(double timeEnd, double stepSize, DESSolver solver) This method computes the numerical solution of the flattened SBML Model simulated using the RosenbrockSolver and then maps the solutions from the flattened model back to the original model.

Uses of MultiTable in org.simulator.io

Methods in org.simulator.io that return MultiTable

Modifier and Type	Method and Description
MultiTable	CSVImporter.readMultiTableFromCSV(org.sbml.jsbml.Model model, String pathname) Converts the content of the CSV file in the form of the MultiTable.

Uses of MultiTable in org.simulator.math

Methods in org.simulator.math with parameters of type MultiTable

Modifier and Type	Method and Description
double	QualityMeasure.distance(MultiTable x, MultiTable expected)
List<Double>	QualityMeasure.getColumnDistances(MultiTable x, MultiTable expected) Computes the distance of two matrices as the sum of the distances of each row.
Map<String,Double>	QualityMeasure.getMaxAbsDistances(MultiTable x, MultiTable expected)

Uses of MultiTable in org.simulator.math.odes

Methods in org.simulator.math.odes that return MultiTable

Modifier and Type	Method and Description
MultiTable	MultiTable.filter(double[] timepoints) Creates a multi block table only containing the values for the given timepoints (if available)
MultiTable	DESSolver.solve(DESystem DES, double[] initialValues, double[] timepoints) Solves the given differential equation system with the step size h and the number of steps as given starting at the value x.
MultiTable	AbstractDESSolver.solve(DESystem DES, double[] initialValues, double[] timepoints) Solves the given differential equation system with the step size h and the number of steps as given starting at the value x.
MultiTable	DESSolver.solve(DESystem DES, double[] initialValues, double[] timepoints, PropertyChangeListener propertyChangeListener) Solves the given differential equation system with the step size h and the number of steps as given starting at the value x.
MultiTable	AbstractDESSolver.solve(DESystem DES, double[] initialValues, double[] timePoints, PropertyChangeListener propertyChangeListener) Solves the given differential equation system with the step size h and the number of steps as given starting at the value x.
MultiTable	DESSolver.solve(DESystem DES, double[] initialValues, double timeBegin, double timeEnd) Solves the given differential equation system
MultiTable	AbstractDESSolver.solve(DESystem DES, double[] initialValues, double timeBegin, double timeEnd) Solves the given differential equation system
MultiTable	DESSolver.solve(DESystem DES, double[] initialValues, double x, double h, int steps) Solves the given differential equation system with the step size h and the number of steps as given starting at the value x.
MultiTable	AbstractDESSolver.solve(DESystem DES, double[] initialValues, double x, double h, int steps) Solves the given differential equation system with the step size h and the number of steps as given starting at the value x.
MultiTable	DESSolver.solve(DESystem DES, double[] initialValues, double x, double h, int steps, PropertyChangeListener propertyChangeListener) Solves the given differential equation system with the step size h and the number of steps as given starting at the value x.
MultiTable	AbstractDESSolver.solve(DESystem DES, double[] initialValues, double x, double h, int steps, PropertyChangeListener propertyChangeListener) Solves the given differential equation system with the step size h and the number of steps as given starting at the value x.
MultiTable	DESSolver.solve(DESystem DES, double[] initialValues, double timeBegin, double timeEnd, PropertyChangeListener propertyChangeListener) Solves the given differential equation system
MultiTable	AbstractDESSolver.solve(DESystem DES, double[] initialValues, double timeBegin, double timeEnd, PropertyChangeListener propertyChangeListener) Solves the given differential equation system
MultiTable	DESSolver.solve(DESystem DES, MultiTable.Block timeSeriesInitConditions, double[] initialValues) Solves the given DESystem using new initial conditions in each time step.
MultiTable	AbstractDESSolver.solve(DESystem DES, MultiTable.Block timeSeriesInitConditions, double[] initialValues) Solves the given DESystem using new initial conditions in each time step.
MultiTable	DESSolver.solve(DESystem DES, MultiTable.Block timeSeriesInitConditions, double[] initialValues, PropertyChangeListener propertyChangeListener) Solves the given DESystem using new initial conditions in each time step.
MultiTable	AbstractDESSolver.solve(DESystem DES, MultiTable.Block initConditions, double[] initialValues, PropertyChangeListener propertyChangeListener) Solves the given DESystem using new initial conditions in each time step.
MultiTable	AbstractDESSolver.steadystate(DESystem DES, double[] initialValues, double maxSteps)

Uses of MultiTable in org.simulator.plot

Constructors in org.simulator.plot with parameters of type MultiTable

Constructor and Description
PlotMultiTable(MultiTable table) Initializes the JFreeChart and dataSet for the chart using MultiTable with a default title
PlotMultiTable(MultiTable table, String title) Initializes the JFreeChart and dataSet for the chart using MultiTable

Uses of MultiTable in org.simulator.sedml

Methods in org.simulator.sedml that return MultiTable

Modifier and Type	Method and Description
MultiTable	MultTableSEDMLWrapper.getMultiTable() Gets the underlying MultiTable wrapped by this class.

Constructors in org.simulator.sedml with parameters of type MultiTable

Constructor and Description
MultTableSEDMLWrapper(MultiTable mTable)