Project Dependencies

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId ArtifactId Version Type Licenses
com.blazegraph colt 2.1.4 jar GNU LESSER GENERAL PUBLIC LICENSE Version 2.1
de.uni-rostock.sbi CombineArchive 1.3.6 jar BSD 3Clause
junit junit 4.11 jar Common Public License Version 1.0
kisao libkisao 1.0.3.1-rc jar -
org.apache.commons commons-lang3 3.7 jar Apache License, Version 2.0
org.apache.commons commons-math 2.2 jar The Apache Software License, Version 2.0
org.jdom jdom2 2.0.5 jar Similar to Apache License but with the acknowledgment clause removed
org.jfree jfreechart 1.0.19 jar GNU Lesser General Public Licence
org.jlibsedml jlibsedml 2.2.3 jar MIT
org.jmathml jmathml 2.1.0 jar MIT
org.sbml.jsbml jsbml 1.5 jar LGPL LicenseLicensing and Distribution Terms for JSBML
scpsolver GLPKSolverPack 4.35v2 jar -
scpsolver LPSOLVESolverPack 5.5.2.5 jar -
scpsolver SCPSolver 1.0v2 jar -

Project Transitive Dependencies

The following is a list of transitive dependencies for this project. Transitive dependencies are the dependencies of the project dependencies.

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId ArtifactId Version Type Licenses
com.fasterxml.staxmate staxmate 2.3.0 jar BSD
com.fasterxml.woodstox woodstox-core 5.0.1 jar The Apache License, Version 2.0
com.googlecode.json-simple json-simple 1.1.1 jar The Apache Software License, Version 2.0
com.thoughtworks.xstream xstream 1.4.9 jar BSD style
commons-io commons-io 1.4 jar The Apache Software License, Version 2.0
commons-lang commons-lang 2.6 jar The Apache Software License, Version 2.0
concurrent concurrent 1.3.4 jar Public domain, Sun Microsoystems
de.binfalse BFLog 1.3.3 jar The Clear BSD License
dom4j dom4j 1.6.1 jar -
jaxen jaxen 1.1.1 jar -
jdom jdom 1.0 jar -
net.sf.jtidy jtidy r938 jar Java HTML Tidy License
org.apache.logging.log4j log4j-1.2-api 2.3 jar The Apache Software License, Version 2.0
org.apache.logging.log4j log4j-api 2.3 jar The Apache Software License, Version 2.0
org.apache.logging.log4j log4j-core 2.3 jar The Apache Software License, Version 2.0
org.biojava biojava-ontology 4.0.0 jar GNU LGPL v2
org.codehaus.woodstox stax2-api 3.1.4 jar The BSD License
org.hamcrest hamcrest-core 1.3 jar New BSD License
org.jdom jdom 1.1 jar -
org.jdom jdom-contrib 1.1.3 jar Similar to Apache License but with the acknowledgment clause removed
org.jfree jcommon 1.0.23 jar GNU Lesser General Public Licence
org.sbml.jsbml jsbml-core 1.5 jar LGPL LicenseLicensing and Distribution Terms for JSBML
org.sbml.jsbml.ext jsbml-arrays 1.5 jar LGPL LicenseLicensing and Distribution Terms for JSBML
org.sbml.jsbml.ext jsbml-comp 1.5 jar LGPL LicenseLicensing and Distribution Terms for JSBML
org.sbml.jsbml.ext jsbml-distrib 1.5 jar LGPL LicenseLicensing and Distribution Terms for JSBML
org.sbml.jsbml.ext jsbml-dyn 1.5 jar LGPL LicenseLicensing and Distribution Terms for JSBML
org.sbml.jsbml.ext jsbml-fbc 1.5 jar LGPL LicenseLicensing and Distribution Terms for JSBML
org.sbml.jsbml.ext jsbml-groups 1.5 jar LGPL LicenseLicensing and Distribution Terms for JSBML
org.sbml.jsbml.ext jsbml-layout 1.5 jar LGPL LicenseLicensing and Distribution Terms for JSBML
org.sbml.jsbml.ext jsbml-multi 1.5 jar LGPL LicenseLicensing and Distribution Terms for JSBML
org.sbml.jsbml.ext jsbml-qual 1.5 jar LGPL LicenseLicensing and Distribution Terms for JSBML
org.sbml.jsbml.ext jsbml-render 1.5 jar LGPL LicenseLicensing and Distribution Terms for JSBML
org.sbml.jsbml.ext jsbml-req 1.5 jar LGPL LicenseLicensing and Distribution Terms for JSBML
org.sbml.jsbml.ext jsbml-spatial 1.5 jar LGPL LicenseLicensing and Distribution Terms for JSBML
org.sbml.jsbml.modules jsbml-tidy 1.5 jar LGPL LicenseLicensing and Distribution Terms for JSBML
org.slf4j slf4j-api 1.7.13 jar MIT License
org.w3c.jigsaw jigsaw 2.2.6 jar W3C Software License
xalan xalan 2.7.0 jar -
xerces xercesImpl 2.6.2 jar -
xml-apis xml-apis 1.3.02 jar -
xmlpull xmlpull 1.1.3.1 jar Public Domain
xom xom 1.2.5 jar The GNU Lesser General Public License, Version 2.1
xpp3 xpp3_min 1.1.4c jar Indiana University Extreme! Lab Software License, vesion 1.1.1Public Domain

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

GroupId ArtifactId Version Type Licenses
org.apache.logging.log4j log4j-slf4j-impl 2.1 jar The Apache Software License, Version 2.0

Project Dependency Graph

Dependency Tree

Licenses

W3C Software License: W3C Jigsaw

LGPL License: JSBML, jsbml-arrays, jsbml-comp, jsbml-core, jsbml-distrib, jsbml-dyn, jsbml-fbc, jsbml-groups, jsbml-layout, jsbml-multi, jsbml-qual, jsbml-render, jsbml-req, jsbml-spatial, jsbml-tidy

The Apache License, Version 2.0: Woodstox

The BSD License: Stax2 API

MIT License: SLF4J API Module

GNU LGPL v2: biojava-ontology

New BSD License: Hamcrest Core

The GNU Lesser General Public License, Version 2.1: XOM

BSD style: XStream Core

BSD: StaxMate

Similar to Apache License but with the acknowledgment clause removed: JDOM

Public domain, Sun Microsoystems: Dough Lea's util.concurrent package

Unknown: GLPKSolverPack, JDOM, LPSOLVESolverPack, SCPSolver, dom4j, jdom, libkisao, xalan, xercesImpl, xml-apis

Apache License, Version 2.0: Apache Commons Lang

Common Public License Version 1.0: JUnit

BSD 3Clause: CombineArchive

The Clear BSD License: BFLog

GNU LESSER GENERAL PUBLIC LICENSE Version 2.1: Blazegraph Colt

Java HTML Tidy License: JTidy

Indiana University Extreme! Lab Software License, vesion 1.1.1: MXP1: Xml Pull Parser 3rd Edition (XPP3)

Public Domain: MXP1: Xml Pull Parser 3rd Edition (XPP3), XML Pull Parsing API

GNU Lesser General Public License: Systems Biology Simulation Core Library (SBSCL)

MIT: JMathml library, Jlibsedml library

GNU Lesser General Public Licence: JCommon, JFreeChart

Licensing and Distribution Terms for JSBML: JSBML, jsbml-arrays, jsbml-comp, jsbml-core, jsbml-distrib, jsbml-dyn, jsbml-fbc, jsbml-groups, jsbml-layout, jsbml-multi, jsbml-qual, jsbml-render, jsbml-req, jsbml-spatial, jsbml-tidy

The Apache Software License, Version 2.0: Apache Log4j 1.x Compatibility API, Apache Log4j API, Apache Log4j Core, Apache Log4j SLF4J Binding, Commons IO, Commons Lang, Commons Math, JSON.simple

Dependency File Details

Filename Size Entries Classes Packages Java Version Debug Information
colt-2.1.4.jar 793.9 kB 585 555 21 1.7 Yes
staxmate-2.3.0.jar 82.9 kB 77 61 5 1.5 Yes
woodstox-core-5.0.1.jar 511.6 kB 237 204 16 1.6 Yes
json-simple-1.1.1.jar 23.9 kB 23 12 2 1.2 Yes
xstream-1.4.9.jar 549.1 kB 477 446 22 1.8 Yes
commons-io-1.4.jar 109 kB 93 76 5 1.3 Yes
commons-lang-2.6.jar 284.2 kB 155 133 10 1.3 Yes
concurrent-1.3.4.jar 189.3 kB 230 221 2 1.1 No
BFLog-1.3.3.jar 8.6 kB 15 4 2 1.5 Yes
CombineArchive-1.3.6.jar 39.3 kB 27 14 3 1.7 Yes
dom4j-1.6.1.jar 313.9 kB 208 190 14 1.3 Yes
jaxen-1.1.1.jar 226.9 kB 236 214 17 1.2 Yes
jdom-1.0.jar 153.3 kB 87 75 8 1.1 Yes
junit-4.11.jar 245 kB 266 233 28 1.5 Yes
libkisao-1.0.3.1-rc.jar 3.7 MB 2879 2513 126 1.6 Yes
jtidy-r938.jar 249.9 kB 141 123 2 1.3 Yes
commons-lang3-3.7.jar 499.6 kB 295 270 13 1.7 Yes
commons-math-2.2.jar 988.5 kB 684 629 41 1.5 Yes
log4j-1.2-api-2.3.jar 36.9 kB 48 31 5 1.6 Yes
log4j-api-2.3.jar 135.9 kB 103 84 6 1.6 Yes
log4j-core-2.3.jar 827 kB 621 552 40 1.6 Yes
log4j-slf4j-impl-2.1.jar 22.5 kB 26 10 2 1.6 Yes
biojava-ontology-4.0.0.jar 68.9 kB 70 58 4 1.6 Yes
stax2-api-3.1.4.jar 161.9 kB 144 124 11 1.5 Yes
hamcrest-core-1.3.jar 45 kB 52 45 3 1.5 Yes
jdom-1.1.jar 153.1 kB 89 76 8 1.2 Yes
jdom-contrib-1.1.3.jar 56.4 kB 49 37 7 1.2 Yes
jdom2-2.0.5.jar 299.7 kB 211 191 15 1.5 Yes
jcommon-1.0.23.jar 330.2 kB 249 209 18 1.6 Yes
jfreechart-1.0.19.jar 1.6 MB 718 635 36 1.6 Yes
jlibsedml-2.2.3.jar 250.5 kB 157 132 7 1.7 Yes
jmathml-2.1.0.jar 91 kB 87 78 1 1.5 Yes
jsbml-1.5.jar 1.7 kB 3 0 0 - No
jsbml-core-1.5.jar 1.7 MB 748 696 23 1.7 Yes
jsbml-arrays-1.5.jar 120.5 kB 73 47 8 1.7 Yes
jsbml-comp-1.5.jar 240.9 kB 291 92 4 1.7 Yes
jsbml-distrib-1.5.jar 29.8 kB 27 9 3 1.7 Yes
jsbml-dyn-1.5.jar 49.9 kB 28 9 2 1.7 Yes
jsbml-fbc-1.5.jar 106.2 kB 80 59 4 1.7 Yes
jsbml-groups-1.5.jar 24.3 kB 26 9 2 1.7 Yes
jsbml-layout-1.5.jar 237 kB 194 170 3 1.7 Yes
jsbml-multi-1.5.jar 139.8 kB 114 93 4 1.7 Yes
jsbml-qual-1.5.jar 99.8 kB 92 72 3 1.7 Yes
jsbml-render-1.5.jar 386.2 kB 310 289 4 1.7 Yes
jsbml-req-1.5.jar 11.6 kB 21 4 2 1.7 Yes
jsbml-spatial-1.5.jar 379 kB 281 260 3 1.7 Yes
jsbml-tidy-1.5.jar 7.5 kB 12 2 1 1.7 Yes
slf4j-api-1.7.13.jar 33.1 kB 40 29 3 1.5 Yes
jigsaw-2.2.6.jar 2.7 MB 944 944 73 1.2 Yes
GLPKSolverPack-4.35v2.jar 3.5 MB 19 4 2 1.8 No
LPSOLVESolverPack-5.5.2.5.jar 1.4 MB 20 8 2 1.6 No
SCPSolver-1.0v2.jar 87.8 kB 72 60 8 1.8 No
xalan-2.7.0.jar 2.7 MB 1267 1205 42 1.1 Yes
xercesImpl-2.6.2.jar 1 MB 845 784 37 1.1 No
xml-apis-1.3.02.jar 194.2 kB 341 301 25 1.1 No
xmlpull-1.1.3.1.jar 7.2 kB 10 4 1 1.2 Yes
xom-1.2.5.jar 308.9 kB 311 286 17 1.2 No
xpp3_min-1.1.4c.jar 25 kB 12 3 2 1.1 Yes
Total Size Entries Classes Packages Java Version Debug Information
58 28.5 MB 15520 13674 778 1.8 50
compile: 57 compile: 28.5 MB compile: 15494 compile: 13664 compile: 776 - compile: 49
runtime: 1 runtime: 22.5 kB runtime: 26 runtime: 10 runtime: 2 - runtime: 1