Uses of Interface
org.simulator.math.odes.DESystem

Packages that use DESystem

org.simulator.math.odes
org.simulator.sbml

Uses of DESystem in org.simulator.math.odes

Subinterfaces of DESystem in org.simulator.math.odes

interface	DelayedDESystem This interface describes a differential equation system containing values with a delay function.
interface	EventDESystem This Class represents an event-driven differential equation system
interface	FastProcessDESystem This interface describes differential equation systems with fast processes.
interface	RichDESystem A RichDESystem is a DESystem that provides additional information besides the pure rate of change during its evaluation.

Methods in org.simulator.math.odes with parameters of type DESystem

protected void	AbstractDESSolver.additionalResults(DESystem DES, double t, double[] yTemp, MultiTable data, int rowIndex) Compute additional result values
double[]	RungeKutta_EventSolver.computeChange(DESystem DES, double[] yTemp, double t, double h, double[] change, boolean steadyState)
double[]	RosenbrockSolver.computeChange(DESystem DES, double[] y2, double time, double currentStepSize, double[] change, boolean steadyState)
double[]	FirstOrderSolver.computeChange(DESystem DES, double[] y, double t, double stepSize, double[] change, boolean steadyState)
double[]	EulerMethod.computeChange(DESystem DES, double[] yPrev, double t, double stepSize, double[] change, boolean steadyState)
abstract double[]	AbstractDESSolver.computeChange(DESystem DES, double[] y, double t, double stepSize, double[] change, boolean steadyState) Computes the change for a given system at the current time with the current setting for the integration step size.
(package private) double	AbstractDESSolver.computeNextState(DESystem DES, double t, double stepSize, double[] yPrev, double[] change, double[] yTemp, boolean increase, boolean steadyState)
protected MultiTable	AbstractDESSolver.initResultMatrix(DESystem DES, double[] initialValues, double[] timePoints)
protected MultiTable	AbstractDESSolver.initResultMatrix(DESystem DES, double[] initialValues, double timeBegin, double timeEnd)
protected MultiTable	AbstractDESSolver.initResultMatrix(DESystem DES, double[] initialValues, double timeBegin, int numSteps)
boolean	AbstractDESSolver.processEventsAndRules(boolean forceProcessing, DESystem DES, double t, double previousTime, double[] yTemp) Function for processing the events and rules at a certain time step.
MultiTable	DESSolver.solve(DESystem DES, double[] initialvalue, double[] timepoints) Solves the given differential equation system with the step size h and the number of steps as given starting at the value x.
MultiTable	AbstractDESSolver.solve(DESystem DES, double[] initialValues, double[] timePoints)
MultiTable	DESSolver.solve(DESystem DES, double[] initialValues, double timeBegin, double timeEnd) Solves the given differential equation system
MultiTable	AbstractDESSolver.solve(DESystem DES, double[] initialValues, double timeBegin, double timeEnd)
MultiTable	DESSolver.solve(DESystem DES, double[] initalValues, double x, double h, int steps) Solves the given differential equation system with the step size h and the number of steps as given starting at the value x.
MultiTable	AbstractDESSolver.solve(DESystem DES, double[] initialValues, double x, double h, int steps)
MultiTable	DESSolver.solve(DESystem DES, MultiTable.Block timeSeriesInitConditions, double[] initialValues) Solves the given DESystem using new initial conditions in each time step.
MultiTable	AbstractDESSolver.solve(DESystem DES, MultiTable.Block initConditions, double[] initialValues)
double	RosenbrockSolver.step(DESystem DES) This function tries to make a time step.

Uses of DESystem in org.simulator.sbml

Classes in org.simulator.sbml that implement DESystem

class

SBMLinterpreter This DifferentialEquationSystem takes a model in SBML format and maps it to a data structure that is understood by the AbstractDESSolver.