org.simulator.sbml.astnode
Class RateRuleObject

java.lang.Object
  org.simulator.sbml.astnode.RuleObject
      org.simulator.sbml.astnode.RateRuleObject

public class RateRuleObject
extends RuleObject

This class can compute and store the value of a rate rule together with the variable of the rule.

Version:

$Rev: 149 $

Author:

Roland Keller

Field Summary

Fields inherited from class org.simulator.sbml.astnode.RuleObject

compartmentIndex, hasOnlySubstanceUnits, hasZeroSpatialDimensions, index, isSetInitialAmount, isSetInitialConcentration, isSpecies, nodeObject, value, valueHolder

Constructor Summary

RateRuleObject(ASTNodeObject nodeObject, int index)

RateRuleObject(ASTNodeObject nodeObject, int index, java.util.List<java.lang.Integer> speciesIndices, ValueHolder valueHolder)
Constructor for a rule with a compartment as variable

RateRuleObject(ASTNodeObject nodeObject, int index, org.sbml.jsbml.Species sp, int compartmentIndex, boolean hasZeroSpatialDimensions, ValueHolder valueHolder)
Constructor for a rule with a species as variable

Method Summary

void	processRule(double[] changeRate, double[] Y, double time) Processes the rule and saves the new value of the corresponding variable in the changeRate vector.

Methods inherited from class org.simulator.sbml.astnode.RuleObject

getIndex, getValue, processAssignmentVariable

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RateRuleObject

public RateRuleObject(ASTNodeObject nodeObject,
                      int index)

Parameters:

nodeObject -

index -

RateRuleObject

public RateRuleObject(ASTNodeObject nodeObject,
                      int index,
                      org.sbml.jsbml.Species sp,
                      int compartmentIndex,
                      boolean hasZeroSpatialDimensions,
                      ValueHolder valueHolder)

Constructor for a rule with a species as variable

Parameters:

nodeObject -

index -

sp -

compartmentIndex -

hasZeroSpatialDimensions -

valueHolder -

RateRuleObject

public RateRuleObject(ASTNodeObject nodeObject,
                      int index,
                      java.util.List<java.lang.Integer> speciesIndices,
                      ValueHolder valueHolder)

Constructor for a rule with a compartment as variable

Parameters:

nodeObject -

index -

speciesIndices -

valueHolder -

Method Detail

processRule

public void processRule(double[] changeRate,
                        double[] Y,
                        double time)

Processes the rule and saves the new value of the corresponding variable in the changeRate vector.

Parameters:

changeRate -

Y -

time -