org.simulator.sbml.astnode
Class SpeciesValue

java.lang.Object
  org.simulator.sbml.astnode.ASTNodeObject
      org.simulator.sbml.astnode.SpeciesValue

public class SpeciesValue
extends ASTNodeObject

This class computes and stores values of ASTNodes that refer to a species.

Since:

1.0

Version:

$Rev: 22 $

Author:

Roland Keller

Field Summary

protected int	compartmentPosition The position of the compartment value of the species in the Y vector of the value holder
protected boolean	hasOnlySubstanceUnits The hasOnlySubstanceUnits attribute of the species
protected java.lang.String	id The id of the species
protected boolean	isSetInitialAmount Has the species an initial amount set?
protected boolean	isSetInitialConcentration Has the species an initial concentration set?
protected int	position The position of the species value in the Y vector of the value holder
protected org.sbml.jsbml.Species	s The corresponding species
protected ValueHolder	valueHolder The value holder that stores the current simulation results
protected boolean	zeroSpatialDimensions Has the compartment of the species no spatial dimensions?

Fields inherited from class org.simulator.sbml.astnode.ASTNodeObject

alreadyProcessed, booleanValue, children, denominator, doubleValue, exponent, interpreter, isConstant, isDouble, isInfinite, leftChild, logger, mantissa, name, node, nodeType, numChildren, numerator, real, rightChild, time, units

Constructor Summary

SpeciesValue(ASTNodeInterpreterWithTime interpreter, org.sbml.jsbml.ASTNode node, org.sbml.jsbml.Species s, ValueHolder valueHolder, int position, int compartmentPosition, boolean zeroSpatialDimensions)

Method Summary

protected void

computeDoubleValue() Computes the double value of the node.

Methods inherited from class org.simulator.sbml.astnode.ASTNodeObject

compileBoolean, compileDouble, computeBooleanValue, getConstant, getName, getTime, getValue, isName, reset, setTime

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

s

protected org.sbml.jsbml.Species s

The corresponding species

id

protected java.lang.String id

The id of the species

valueHolder

protected ValueHolder valueHolder

The value holder that stores the current simulation results

isSetInitialAmount

protected boolean isSetInitialAmount

Has the species an initial amount set?

hasOnlySubstanceUnits

protected boolean hasOnlySubstanceUnits

The hasOnlySubstanceUnits attribute of the species

isSetInitialConcentration

protected boolean isSetInitialConcentration

Has the species an initial concentration set?

position

protected int position

The position of the species value in the Y vector of the value holder

compartmentPosition

protected int compartmentPosition

The position of the compartment value of the species in the Y vector of the value holder

zeroSpatialDimensions

protected boolean zeroSpatialDimensions

Has the compartment of the species no spatial dimensions?

Constructor Detail

SpeciesValue

public SpeciesValue(ASTNodeInterpreterWithTime interpreter,
                    org.sbml.jsbml.ASTNode node,
                    org.sbml.jsbml.Species s,
                    ValueHolder valueHolder,
                    int position,
                    int compartmentPosition,
                    boolean zeroSpatialDimensions)

Parameters:

interpreter -

node -

s -

valueHolder -

position -

compartmentPosition -

zeroSpatialDimensions -

Method Detail

computeDoubleValue

protected void computeDoubleValue()

Description copied from class: ASTNodeObject

Computes the double value of the node.

Overrides:

computeDoubleValue in class ASTNodeObject