org.simulator.math.odes
Class FirstOrderSolver

java.lang.Object
  org.simulator.math.odes.AbstractDESSolver
      org.simulator.math.odes.AdaptiveStepsizeIntegrator
          org.simulator.math.odes.FirstOrderSolver

All Implemented Interfaces:

Serializable, EventHandler, DelayValueHolder, DESSolver

Direct Known Subclasses:

AdamsBashforthSolver, AdamsMoultonSolver, DormandPrince54Solver, DormandPrince853Solver, GraggBulirschStoerSolver, HighamHall54Solver

public abstract class FirstOrderSolver
extends AdaptiveStepsizeIntegrator

This class is the superclass of the wrapper classes for the solvers of the Apache Math library.

Since:

0.9

Version:

$Rev: 203 $

Author:

Roland Keller

See Also:

Serialized Form

Field Summary

protected AbstractIntegrator

integrator The integrator used.

Fields inherited from class org.simulator.math.odes.AdaptiveStepsizeIntegrator

absTol, relTol

Fields inherited from interface org.apache.commons.math.ode.events.EventHandler

CONTINUE, RESET_DERIVATIVES, RESET_STATE, STOP

Constructor Summary

FirstOrderSolver()
default constructor

FirstOrderSolver(double stepSize)

FirstOrderSolver(double stepSize, boolean nonnegative)

FirstOrderSolver(FirstOrderSolver firstOrderSolver)
clone constructor

Method Summary

abstract FirstOrderSolver	clone()
double[]	computeChange(DESystem DES, double[] y, double t, double stepSize, double[] change, boolean steadyState) Computes the change for a given system at the current time with the current setting for the integration step size.
protected abstract void	createIntegrator() initialization function of the integrator
AbstractIntegrator	getIntegrator()
protected boolean	hasSolverEventProcessing()
void	setStepSize(double stepSize) Set the integration step size.

Methods inherited from class org.simulator.math.odes.AdaptiveStepsizeIntegrator

getAbsTol, getRelTol, setAbsTol, setRelTol

Methods inherited from class org.simulator.math.odes.AbstractDESSolver

additionalResults, addPropertyChangeListener, computeDelayedValue, eventOccurred, firePropertyChange, g, getName, getSerialversionuid, getStepSize, inBetweenSteps, initResultMatrix, initResultMatrix, initResultMatrix, isIncludeIntermediates, isNonnegative, isUnstable, processEvents, processEventsAndRules, processRules, removePropertyChangeListener, reset, resetState, setIncludeIntermediates, setNonnegative, setUnstableFlag, solve, solve, solve, solve

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

integrator

protected AbstractIntegrator integrator

The integrator used.

Constructor Detail

FirstOrderSolver

public FirstOrderSolver()

default constructor

FirstOrderSolver

public FirstOrderSolver(double stepSize)

Parameters:

stepSize -

FirstOrderSolver

public FirstOrderSolver(double stepSize,
                        boolean nonnegative)

Parameters:

stepSize -

the - nonnegative flag of the super class @see org.sbml.simulator.math.odes.AbstractDESSolver

FirstOrderSolver

public FirstOrderSolver(FirstOrderSolver firstOrderSolver)

clone constructor

Parameters:

firstOrderSolver -

Method Detail

setStepSize

public void setStepSize(double stepSize)

Description copied from interface: DESSolver

Set the integration step size.

Specified by:

setStepSize in interface DESSolver

Overrides:

setStepSize in class AbstractDESSolver

clone

public abstract FirstOrderSolver clone()

Specified by:

clone in interface DESSolver

Specified by:

clone in class AbstractDESSolver

Returns:

the cloned solver

computeChange

public double[] computeChange(DESystem DES,
                              double[] y,
                              double t,
                              double stepSize,
                              double[] change,
                              boolean steadyState)
                       throws DerivativeException

Description copied from class: AbstractDESSolver

Computes the change for a given system at the current time with the current setting for the integration step size.

Specified by:

computeChange in class AbstractDESSolver

Parameters:

DES - The system to be simulated.

y - The current state of the system.

t - The current simulation time.

change - The vector for the resulting change of the system.

Returns:

The change.

Throws:

DerivativeException

createIntegrator

protected abstract void createIntegrator()

initialization function of the integrator

getIntegrator

public AbstractIntegrator getIntegrator()

Returns:

integrator

hasSolverEventProcessing

protected boolean hasSolverEventProcessing()

Specified by:

hasSolverEventProcessing in class AbstractDESSolver

Returns:

Does the solver do the event processing itself?