org.simulator.sbml.astnode
Class ASTNodeInterpreter

java.lang.Object
  org.simulator.sbml.astnode.ASTNodeInterpreter

public class ASTNodeInterpreter
extends Object

This class is an efficient ASTNodeInterpreter that takes the time of the calculation into account. It contains functions similar to the ASTNodeCompiler interface, which have the current time as additional argument.

Since:

1.0

Version:

$Rev: 203 $

Author:

Roland Keller

Field Summary

static Logger

logger A logger.

Constructor Summary

ASTNodeInterpreter(SBMLValueHolder valueHolder)

Method Summary

double	abs(ASTNodeValue userObject, double time)
boolean	and(List<ASTNodeValue> nodes, int size, double time)
double	arccos(ASTNodeValue userObject, double time)
double	arccosh(ASTNodeValue userObject, double time)
double	arccot(ASTNodeValue userObject, double time)
double	arccoth(ASTNodeValue userObject, double time)
double	arccsc(ASTNodeValue userObject, double time)
double	arccsch(ASTNodeValue userObject, double time)
double	arcsec(ASTNodeValue userObject, double time)
double	arcsech(ASTNodeValue userObject, double time)
double	arcsin(ASTNodeValue userObject, double time)
double	arcsinh(ASTNodeValue userObject, double time)
double	arctan(ASTNodeValue userObject, double time)
double	arctanh(ASTNodeValue userObject, double time)
double	ceiling(ASTNodeValue userObject, double time)
double	compile(double mantissa, int exponent, String units)
double	compile(double value, String units)
boolean	compileBoolean(CallableSBase nsb, double time)
double	compileDouble(CallableSBase nsb, double time)
double	compileDouble(String name, double time)
String	compileString(ASTNode child)
String	compileString(ASTNodeValue child)
double	cos(ASTNodeValue userObject, double time)
double	cosh(ASTNodeValue userObject, double time)
double	cot(ASTNodeValue userObject, double time)
double	coth(ASTNodeValue userObject, double time)
double	csc(ASTNodeValue userObject, double time)
double	csch(ASTNodeValue userObject, double time)
double	delay(String delayName, ASTNodeValue x, ASTNodeValue delay, String timeUnits, double time)
boolean	eq(ASTNodeValue left, ASTNodeValue right, double time)
double	exp(ASTNodeValue userObject, double time)
double	factorial(ASTNodeValue userObject, double time)
double	floor(ASTNodeValue userObject, double time)
double	frac(ASTNodeValue left, ASTNodeValue right, double time)
double	frac(int numerator, int denominator)
boolean	functionBoolean(ASTNodeValue rightChild, List<String> variables, List<ASTNodeValue> arguments, double[] values, double time)
boolean	functionBoolean(String name, List<ASTNodeValue> children)
double	functionDouble(ASTNodeValue rightChild, List<String> variables, List<ASTNodeValue> arguments, int nArguments, double[] values, double time)
double	functionDouble(String functionDefinitionName, List<ASTNodeValue> args, double time)
boolean	geq(ASTNodeValue left, ASTNodeValue right, double time)
boolean	gt(ASTNodeValue left, ASTNodeValue right, double time)
boolean	lambdaBoolean(List<ASTNodeValue> nodes, double time)
double	lambdaDouble(List<ASTNodeValue> nodes, double time)
boolean	leq(ASTNodeValue left, ASTNodeValue right, double time)
double	ln(ASTNodeValue userObject, double time)
double	log(ASTNodeValue left, ASTNodeValue right, double time)
double	log(ASTNodeValue userObject, double time)
boolean	lt(ASTNodeValue left, ASTNodeValue right, double time)
double	minus(List<ASTNodeValue> nodes, int size, double time)
boolean	neq(ASTNodeValue left, ASTNodeValue right, double time)
boolean	not(ASTNodeValue node, double time)
boolean	or(List<ASTNodeValue> nodes, double time)
double	piecewise(List<ASTNodeValue> nodes, double time)
double	plus(List<ASTNodeValue> nodes, int size, double time)
double	pow(ASTNodeValue left, ASTNodeValue right, double time)
double	root(ASTNodeValue rootExponent, ASTNodeValue radiant, double time)
double	root(double rootExponent, ASTNodeValue userObject, double time)
double	sec(ASTNodeValue userObject, double time)
double	sech(ASTNodeValue userObject, double time)
double	sin(ASTNodeValue userObject, double time)
double	sinh(ASTNodeValue userObject, double time)
double	sqrt(ASTNodeValue userObject, double time)
double	symbolTime(String name)
double	tan(ASTNodeValue userObject, double time)
double	tanh(ASTNodeValue userObject, double time)
double	times(List<ASTNodeValue> nodes, int size, double time)
String	toString(ASTNode value)
double	uMinus(ASTNodeValue userObject, double time)
boolean	xor(List<ASTNodeValue> nodes, double time)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

public static final Logger logger

A logger.

Constructor Detail

ASTNodeInterpreter

public ASTNodeInterpreter(SBMLValueHolder valueHolder)

Parameters:

valueHolder -

Method Detail

toString

public final String toString(ASTNode value)

Parameters:

value -

Returns:

compileDouble

public double compileDouble(String name,
                            double time)

Parameters:

name -

time -

Returns:

compileDouble

public double compileDouble(CallableSBase nsb,
                            double time)

Parameters:

nsb -

time -

Returns:

compileBoolean

public boolean compileBoolean(CallableSBase nsb,
                              double time)

Parameters:

nsb -

time -

Returns:

functionDouble

public double functionDouble(ASTNodeValue rightChild,
                             List<String> variables,
                             List<ASTNodeValue> arguments,
                             int nArguments,
                             double[] values,
                             double time)

Parameters:

rightChild -

variables -

arguments -

nArguments -

values -

time -

Returns:

compileString

public String compileString(ASTNodeValue child)

Parameters:

child -

Returns:

compileString

public String compileString(ASTNode child)

Parameters:

child -

Returns:

lambdaDouble

public double lambdaDouble(List<ASTNodeValue> nodes,
                           double time)

Parameters:

nodes -

time -

Returns:

lambdaBoolean

public boolean lambdaBoolean(List<ASTNodeValue> nodes,
                             double time)

Parameters:

nodes -

time -

Returns:

piecewise

public double piecewise(List<ASTNodeValue> nodes,
                        double time)

Parameters:

nodes -

time -

Returns:

log

public double log(ASTNodeValue userObject,
                  double time)

Parameters:

userObject -

time -

Returns:

log

public double log(ASTNodeValue left,
                  ASTNodeValue right,
                  double time)

Parameters:

left -

right -

time -

Returns:

functionDouble

public double functionDouble(String functionDefinitionName,
                             List<ASTNodeValue> args,
                             double time)

Parameters:

functionDefinitionName -

args -

time -

Returns:

tanh

public double tanh(ASTNodeValue userObject,
                   double time)

Parameters:

userObject -

time -

Returns:

tan

public double tan(ASTNodeValue userObject,
                  double time)

Parameters:

userObject -

time -

Returns:

sinh

public double sinh(ASTNodeValue userObject,
                   double time)

Parameters:

userObject -

time -

Returns:

sin

public double sin(ASTNodeValue userObject,
                  double time)

Parameters:

userObject -

time -

Returns:

sech

public double sech(ASTNodeValue userObject,
                   double time)

Parameters:

userObject -

time -

Returns:

sec

public double sec(ASTNodeValue userObject,
                  double time)

Parameters:

userObject -

time -

Returns:

root

public double root(ASTNodeValue rootExponent,
                   ASTNodeValue radiant,
                   double time)

Parameters:

rootExponent -

radiant -

time -

Returns:

root

public double root(double rootExponent,
                   ASTNodeValue userObject,
                   double time)

Parameters:

rootExponent -

userObject -

time -

Returns:

ln

public double ln(ASTNodeValue userObject,
                 double time)

Parameters:

userObject -

time -

Returns:

floor

public double floor(ASTNodeValue userObject,
                    double time)

Parameters:

userObject -

time -

Returns:

factorial

public double factorial(ASTNodeValue userObject,
                        double time)

Parameters:

userObject -

time -

Returns:

exp

public double exp(ASTNodeValue userObject,
                  double time)

Parameters:

userObject -

time -

Returns:

csch

public double csch(ASTNodeValue userObject,
                   double time)

Parameters:

userObject -

time -

Returns:

csc

public double csc(ASTNodeValue userObject,
                  double time)

Parameters:

userObject -

time -

Returns:

coth

public double coth(ASTNodeValue userObject,
                   double time)

Parameters:

userObject -

time -

Returns:

cot

public double cot(ASTNodeValue userObject,
                  double time)

Parameters:

userObject -

time -

Returns:

cosh

public double cosh(ASTNodeValue userObject,
                   double time)

Parameters:

userObject -

time -

Returns:

cos

public double cos(ASTNodeValue userObject,
                  double time)

Parameters:

userObject -

time -

Returns:

ceiling

public double ceiling(ASTNodeValue userObject,
                      double time)

Parameters:

userObject -

time -

Returns:

arctanh

public double arctanh(ASTNodeValue userObject,
                      double time)

Parameters:

userObject -

time -

Returns:

functionBoolean

public boolean functionBoolean(String name,
                               List<ASTNodeValue> children)

Parameters:

name -

children -

Returns:

functionBoolean

public boolean functionBoolean(ASTNodeValue rightChild,
                               List<String> variables,
                               List<ASTNodeValue> arguments,
                               double[] values,
                               double time)

Parameters:

rightChild -

variables -

arguments -

values -

time -

Returns:

lt

public boolean lt(ASTNodeValue left,
                  ASTNodeValue right,
                  double time)

Parameters:

left -

right -

time -

Returns:

leq

public boolean leq(ASTNodeValue left,
                   ASTNodeValue right,
                   double time)

Parameters:

left -

right -

time -

Returns:

neq

public boolean neq(ASTNodeValue left,
                   ASTNodeValue right,
                   double time)

Parameters:

left -

right -

time -

Returns:

gt

public boolean gt(ASTNodeValue left,
                  ASTNodeValue right,
                  double time)

Parameters:

left -

right -

time -

Returns:

geq

public boolean geq(ASTNodeValue left,
                   ASTNodeValue right,
                   double time)

Parameters:

left -

right -

time -

Returns:

eq

public boolean eq(ASTNodeValue left,
                  ASTNodeValue right,
                  double time)

Parameters:

left -

right -

time -

Returns:

not

public boolean not(ASTNodeValue node,
                   double time)

Parameters:

node -

time -

Returns:

or

public boolean or(List<ASTNodeValue> nodes,
                  double time)

Parameters:

nodes -

time -

Returns:

xor

public boolean xor(List<ASTNodeValue> nodes,
                   double time)

Parameters:

nodes -

time -

Returns:

and

public boolean and(List<ASTNodeValue> nodes,
                   int size,
                   double time)

Parameters:

nodes -

time -

Returns:

arctan

public double arctan(ASTNodeValue userObject,
                     double time)

Parameters:

userObject -

time -

Returns:

arcsinh

public double arcsinh(ASTNodeValue userObject,
                      double time)

Parameters:

userObject -

time -

Returns:

arcsin

public double arcsin(ASTNodeValue userObject,
                     double time)

Parameters:

userObject -

time -

Returns:

arcsech

public double arcsech(ASTNodeValue userObject,
                      double time)

Parameters:

userObject -

time -

Returns:

arcsec

public double arcsec(ASTNodeValue userObject,
                     double time)

Parameters:

userObject -

time -

Returns:

arccsch

public double arccsch(ASTNodeValue userObject,
                      double time)

Parameters:

userObject -

time -

Returns:

arccsc

public double arccsc(ASTNodeValue userObject,
                     double time)

Parameters:

userObject -

time -

Returns:

arccoth

public double arccoth(ASTNodeValue userObject,
                      double time)

Parameters:

userObject -

time -

Returns:

arccot

public double arccot(ASTNodeValue userObject,
                     double time)

Parameters:

userObject -

time -

Returns:

arccosh

public double arccosh(ASTNodeValue userObject,
                      double time)

Parameters:

userObject -

time -

Returns:

arccos

public double arccos(ASTNodeValue userObject,
                     double time)

Parameters:

userObject -

time -

Returns:

abs

public double abs(ASTNodeValue userObject,
                  double time)

Parameters:

userObject -

time -

Returns:

compile

public double compile(double mantissa,
                      int exponent,
                      String units)

Parameters:

mantissa -

exponent -

units -

Returns:

delay

public final double delay(String delayName,
                          ASTNodeValue x,
                          ASTNodeValue delay,
                          String timeUnits,
                          double time)

Parameters:

delayName -

x -

delay -

timeUnits -

time -

Returns:

symbolTime

public double symbolTime(String name)

Parameters:

name -

Returns:

frac

public double frac(int numerator,
                   int denominator)

Parameters:

numerator -

denominator -

Returns:

frac

public double frac(ASTNodeValue left,
                   ASTNodeValue right,
                   double time)

Parameters:

left -

right -

time -

Returns:

times

public double times(List<ASTNodeValue> nodes,
                    int size,
                    double time)

Parameters:

nodes -

size -

time -

Returns:

minus

public double minus(List<ASTNodeValue> nodes,
                    int size,
                    double time)

Parameters:

nodes -

size -

time -

Returns:

plus

public double plus(List<ASTNodeValue> nodes,
                   int size,
                   double time)

Parameters:

nodes -

size -

time -

Returns:

pow

public double pow(ASTNodeValue left,
                  ASTNodeValue right,
                  double time)

Parameters:

left -

right -

time -

Returns:

compile

public double compile(double value,
                      String units)

Parameters:

value -

units -

Returns:

sqrt

public double sqrt(ASTNodeValue userObject,
                   double time)

Parameters:

userObject -

time -

Returns:

uMinus

public double uMinus(ASTNodeValue userObject,
                     double time)

Parameters:

userObject -

time -

Returns: