Package org.simulator.sedml

Classes for reading and executing SED-ML files.

See:
Description

Class Summary

MultTableSEDMLWrapper	This class adapts the native results to an interface that the SED-ML processor can use to post-process results.
SEDMLExecutor	Facade class to provide a jlibsedml.jar-independent means to execute a SED-ML file.
SEDMLExecutorTest	This test class shows how a SED-ML file can be interpreted and executed using SBML Simulator Core solvers.
SedMLSBMLSimulatorExecutor	This class extends an abstract class from jlibsedml, which provides various support functions such as retrieving models, applying changes to models, working out what tasks need to be executed to achieve an Output, and post-processing of results.
SEDMLWriter	Writes a simulation configuration to SED-ML for export and sharing.
SEDMLWriterTest	Tests the SEDMLWriter

Exception Summary

ExecutionException

Runtime exception indicating that SED-ML execution has failed.

Package org.simulator.sedml Description

Classes for reading and executing SED-ML files. The jlibsedml library is used to perform these operations.

For more information about SED-ML please visit http://sed-ml.org.

Classes for storing and interpreting an SBML model. The most important class is SBMLinterpreter that can return the current vector of derivatives to the solver.

Author:

Richard Adams