Uses of Interface
org.simulator.sbml.SBMLValueHolder

Packages that use SBMLValueHolder

org.simulator.sbml	Classes for storing and interpreting an SBML model.
org.simulator.sbml.astnode	Classes for efficient numerical treatment of equations in form of abstract syntax trees.

Uses of SBMLValueHolder in org.simulator.sbml

Classes in org.simulator.sbml that implement SBMLValueHolder

class

SBMLinterpreter This differential equation system (DESystem) takes a model in SBML format and maps it to a data structure that is understood by the AbstractDESSolver.

Uses of SBMLValueHolder in org.simulator.sbml.astnode

Fields in org.simulator.sbml.astnode declared as SBMLValueHolder

protected SBMLValueHolder	SpeciesValue.valueHolder The value holder that stores the current simulation results
protected SBMLValueHolder	RuleValue.valueHolder The value holder that stores the current simulation results
protected SBMLValueHolder	CompartmentOrParameterValue.valueHolder The value holder that stores the current simulation results.

Constructors in org.simulator.sbml.astnode with parameters of type SBMLValueHolder

AssignmentRuleValue(ASTNodeValue nodeObject, int index, Species sp, int compartmentIndex, boolean hasZeroSpatialDimensions, SBMLValueHolder valueHolder)
Constructor for rules that refer to a species

ASTNodeInterpreter(SBMLValueHolder valueHolder)

CompartmentOrParameterValue(ASTNodeInterpreter interpreter, ASTNode node, Symbol sb, SBMLValueHolder valueHolder, int position)

RateRuleValue(ASTNodeValue nodeObject, int index, List<Integer> speciesIndices, SBMLValueHolder valueHolder)
Constructor for a rule with a compartment as variable

RateRuleValue(ASTNodeValue nodeObject, int index, Species sp, int compartmentIndex, boolean hasZeroSpatialDimensions, SBMLValueHolder valueHolder)
Constructor for a rule with a species as variable

RuleValue(ASTNodeValue nodeObject, int index, Species sp, int compartmentIndex, boolean hasZeroSpatialDimensions, SBMLValueHolder valueHolder)
Constructor for rules that refer to a species.

SpeciesReferenceValue(ASTNodeInterpreter interpreter, ASTNode node, SpeciesReference sr, SBMLValueHolder valueHolder)

SpeciesValue(ASTNodeInterpreter interpreter, ASTNode node, Species s, SBMLValueHolder valueHolder, int position, int compartmentPosition, String compartmentID, boolean zeroSpatialDimensions, boolean isAmount)