A C D E G H I M N P R S T U V

A

accepts(Object) - Method in class de.sbtab.containers.SBTabSBOTermFilter

addMenuBarItem(String, EventHandler<ActionEvent>) - Method in class de.sbtab.utils.SBTabMenuBar

Adds an element to the menu bar

assignStatusBar(String, Double) - Method in class de.sbtab.view.SBTabMainView

C

clearView(String) - Method in class de.sbtab.view.SBTabMainView

COMPARTMENTS - de.sbtab.services.TableType

createTable(TableType) - Method in class de.sbtab.utils.SBTabTableHandler

Generates new table and initializes it in

D

de.sbtab.containers - package de.sbtab.containers

de.sbtab.controller - package de.sbtab.controller

de.sbtab.main - package de.sbtab.main

de.sbtab.services - package de.sbtab.services

de.sbtab.utils - package de.sbtab.utils

de.sbtab.view - package de.sbtab.view

E

expanded - Variable in class de.sbtab.view.SBTabTreeController

G

generateTab(Node, String) - Method in class de.sbtab.utils.SBTabTabsComposer

Generates a tab with some name

getCompartment() - Method in class de.sbtab.containers.SBTabCompartmentWrapper

getCompartmentId() - Method in class de.sbtab.containers.SBTabCompartmentWrapper

getCompartmentName() - Method in class de.sbtab.containers.SBTabCompartmentWrapper

getCompartmentSBOTerm() - Method in class de.sbtab.containers.SBTabCompartmentWrapper

getContext() - Method in class de.sbtab.utils.SBTabMenuBar

getController() - Method in class de.sbtab.view.SBTabMainView

getDoc() - Method in class de.sbtab.controller.SBTabController

getDoc() - Method in class de.sbtab.services.SBTabViewAbstractTable

getDoc() - Method in class de.sbtab.view.SBTabMainView

getDocumentation(String, String) - Method in class de.sbtab.controller.SBTabController

Opens Documentation according to specified documentation URL.

getEnumFromString(Class<T>, String) - Static method in class de.sbtab.view.SBTabTreeController

A common method for all enums since they can't have another base class

getFileExtension(File) - Method in class de.sbtab.controller.SBTabController

getFilePath() - Method in class de.sbtab.controller.SBTabController

getParameter() - Method in class de.sbtab.containers.SBTabParameterWrapper

getParameterId() - Method in class de.sbtab.containers.SBTabParameterWrapper

getParameterName() - Method in class de.sbtab.containers.SBTabParameterWrapper

getParameterSBOTerm() - Method in class de.sbtab.containers.SBTabParameterWrapper

getReaction() - Method in class de.sbtab.containers.SBTabReactionWrapper

getReactionId() - Method in class de.sbtab.containers.SBTabReactionWrapper

getReactionName() - Method in class de.sbtab.containers.SBTabReactionWrapper

getRoot() - Method in class de.sbtab.view.SBTabMainView

getSBOTerm() - Method in class de.sbtab.containers.SBTabReactionWrapper

getSpecies() - Method in class de.sbtab.containers.SBTabSpeciesWrapper

getSpeciesCompartment() - Method in class de.sbtab.containers.SBTabSpeciesWrapper

getSpeciesId() - Method in class de.sbtab.containers.SBTabSpeciesWrapper

getSpeciesName() - Method in class de.sbtab.containers.SBTabSpeciesWrapper

getStage() - Method in class de.sbtab.view.SBTabMainView

getTableProducer() - Method in class de.sbtab.view.SBTabMainView

getTableView(TableType) - Method in class de.sbtab.services.SBTabTableProducer

Generates a table according to the specified table type

getTabPane() - Method in class de.sbtab.utils.SBTabTabsComposer

Returns state of table pull at this moment of time

getTheProjectName() - Method in class de.sbtab.view.SBTabMainView

getTheVersion() - Method in class de.sbtab.view.SBTabMainView

getUnitDefinition() - Method in class de.sbtab.containers.SBTabUnitDefinitionWrapper

getUnitDefinitionId() - Method in class de.sbtab.containers.SBTabUnitDefinitionWrapper

getUnitDefinitionName() - Method in class de.sbtab.containers.SBTabUnitDefinitionWrapper

H

handleOpen() - Method in class de.sbtab.view.SBTabMenuController

I

initialize() - Method in class de.sbtab.containers.SBTabCompartmentWrapper

initialize() - Method in class de.sbtab.containers.SBTabParameterWrapper

initialize() - Method in class de.sbtab.containers.SBTabReactionWrapper

initialize() - Method in class de.sbtab.containers.SBTabSpeciesWrapper

initialize() - Method in class de.sbtab.containers.SBTabUnitDefinitionWrapper

initialize() - Method in interface de.sbtab.controller.SBTabElement

initialize(URL, ResourceBundle) - Method in class de.sbtab.view.SBTabMenuController

initialize(URL, ResourceBundle) - Method in class de.sbtab.view.SBTabTreeController

isDocumentLoaded() - Method in class de.sbtab.view.SBTabMainView

isTabExists(String) - Method in class de.sbtab.utils.SBTabTabsComposer

Used to indicate if tab with this name already exists

M

main(String[]) - Static method in class de.sbtab.main.SBTabMain

makeTableView() - Method in class de.sbtab.services.SBTabCompartmentTable

makeTableView() - Method in class de.sbtab.services.SBTabParameterTable

makeTableView() - Method in class de.sbtab.services.SBTabReactionTable

makeTableView() - Method in class de.sbtab.services.SBTabSpeciesTable

makeTableView() - Method in interface de.sbtab.services.SBTabTableFactory

Generates a TableView of SBTabElement's with predefined ListOf in corresponding factory

makeTableView() - Method in class de.sbtab.services.SBTabUnitDefinitionTable

makeTableView(ListOf<Compartment>) - Method in class de.sbtab.services.SBTabCompartmentTable

makeTableView(ListOf<Parameter>) - Method in class de.sbtab.services.SBTabParameterTable

makeTableView(ListOf<Reaction>) - Method in class de.sbtab.services.SBTabReactionTable

makeTableView(ListOf<Species>) - Method in class de.sbtab.services.SBTabSpeciesTable

makeTableView(ListOf<UnitDefinition>) - Method in class de.sbtab.services.SBTabUnitDefinitionTable

makeTableView(ListOf<T>) - Method in interface de.sbtab.services.SBTabTableFactory

Generates a TableView of SBTabElement's with the conversion of each corresponding element of type T to SBTabElement

N

nodeAdded(TreeNode) - Method in class de.sbtab.controller.SBTabDocument

nodeRemoved(TreeNodeRemovedEvent) - Method in class de.sbtab.controller.SBTabDocument

numErrors(SBMLDocument) - Method in class de.sbtab.controller.SBTabController

Number of Errors in Document

P

PARAMETERS - de.sbtab.services.TableType

propertyChange(PropertyChangeEvent) - Method in class de.sbtab.controller.SBTabDocument

R

REACTIONS - de.sbtab.services.TableType

read(String) - Method in class de.sbtab.controller.SBTabController

Read SBML document from a File.

reInit() - Method in class de.sbtab.view.SBTabMainView

S

save(SBMLDocument, File, String, String) - Method in class de.sbtab.controller.SBTabController

Save SBML document to a File.

SBTabCompartmentTable - Class in de.sbtab.services

Generates TableView of JSBML Compartment by using

SBTabCompartmentTable(SBase) - Constructor for class de.sbtab.services.SBTabCompartmentTable

SBTabCompartmentWrapper - Class in de.sbtab.containers

SBTabCompartmentWrapper(Compartment) - Constructor for class de.sbtab.containers.SBTabCompartmentWrapper

SBTabController - Class in de.sbtab.controller

SBTabController() - Constructor for class de.sbtab.controller.SBTabController

SBTabDocument<T> - Class in de.sbtab.controller

SBTabDocument(T, String) - Constructor for class de.sbtab.controller.SBTabDocument

Constructor for Document

SBTabElement - Interface in de.sbtab.controller

Defines wrapper element for JSBML data node

SBTabMain - Class in de.sbtab.main

SBTabMain() - Constructor for class de.sbtab.main.SBTabMain

SBTabMainView - Class in de.sbtab.view

SBTabMainView() - Constructor for class de.sbtab.view.SBTabMainView

SBTabMenuBar - Class in de.sbtab.utils

A simple menu bar for displaying in SBTabEditor.

SBTabMenuBar() - Constructor for class de.sbtab.utils.SBTabMenuBar

SBTabMenuController - Class in de.sbtab.view

SBTabMenuController() - Constructor for class de.sbtab.view.SBTabMenuController

SBTabMenuController(SBTabMainView, SBTabController) - Constructor for class de.sbtab.view.SBTabMenuController

SBTabParameterTable - Class in de.sbtab.services

Generates TableView of JSBML Parameter by using

SBTabParameterTable(SBase) - Constructor for class de.sbtab.services.SBTabParameterTable

SBTabParameterWrapper - Class in de.sbtab.containers

SBTabParameterWrapper(Parameter) - Constructor for class de.sbtab.containers.SBTabParameterWrapper

SBTabReactionTable - Class in de.sbtab.services

Generates TableView of JSBML Reaction by using

SBTabReactionTable(SBase) - Constructor for class de.sbtab.services.SBTabReactionTable

SBTabReactionWrapper - Class in de.sbtab.containers

SBTabReactionWrapper(Reaction) - Constructor for class de.sbtab.containers.SBTabReactionWrapper

SBTabSBOTermFilter - Class in de.sbtab.containers

SBTabSBOTermFilter(int) - Constructor for class de.sbtab.containers.SBTabSBOTermFilter

SBTabSpeciesTable - Class in de.sbtab.services

Generates TableView of JSBML Species by using

SBTabSpeciesTable(SBase) - Constructor for class de.sbtab.services.SBTabSpeciesTable

SBTabSpeciesWrapper - Class in de.sbtab.containers

SBTabSpeciesWrapper(Species) - Constructor for class de.sbtab.containers.SBTabSpeciesWrapper

SBTabTableFactory<T extends org.sbml.jsbml.SBase,S extends SBTabElement> - Interface in de.sbtab.services

Represents common interface for every SBTabTableFactory

SBTabTableHandler - Class in de.sbtab.utils

Used to handle events in SBTabTreeController

SBTabTableHandler(SBTabTableProducer, BorderPane) - Constructor for class de.sbtab.utils.SBTabTableHandler

SBTabTableProducer - Class in de.sbtab.services

Created to generate the desired TableView.

SBTabTableProducer(SBase) - Constructor for class de.sbtab.services.SBTabTableProducer

SBTabTabsComposer - Class in de.sbtab.utils

Used to create and control tabs in jfx Node

SBTabTabsComposer(BorderPane) - Constructor for class de.sbtab.utils.SBTabTabsComposer

SBTabTreeController - Class in de.sbtab.view

SBTabTreeController(SBTabController, SBTabTableHandler, SBTabMainView) - Constructor for class de.sbtab.view.SBTabTreeController

SBTabUnitDefinitionTable - Class in de.sbtab.services

Generates TableView of JSBML UnitDefinition by using

SBTabUnitDefinitionTable(SBase) - Constructor for class de.sbtab.services.SBTabUnitDefinitionTable

SBTabUnitDefinitionWrapper - Class in de.sbtab.containers

SBTabUnitDefinitionWrapper(UnitDefinition) - Constructor for class de.sbtab.containers.SBTabUnitDefinitionWrapper

SBTabViewAbstractTable - Class in de.sbtab.services

This abstract class contains the basic methods for generating SBTab tables.

SBTabViewAbstractTable(SBase) - Constructor for class de.sbtab.services.SBTabViewAbstractTable

setCompartment(Compartment) - Method in class de.sbtab.containers.SBTabCompartmentWrapper

setCompartmentId(StringProperty) - Method in class de.sbtab.containers.SBTabCompartmentWrapper

setCompartmentName(StringProperty) - Method in class de.sbtab.containers.SBTabCompartmentWrapper

setCompartmentSBOTerm(StringProperty) - Method in class de.sbtab.containers.SBTabCompartmentWrapper

setDoc(SBMLDocument) - Method in class de.sbtab.controller.SBTabController

setDoc(SBMLDocument) - Method in class de.sbtab.view.SBTabMainView

setFilePath(String) - Method in class de.sbtab.controller.SBTabController

setFilePath(String) - Method in class de.sbtab.view.SBTabMainView

setParameter(Parameter) - Method in class de.sbtab.containers.SBTabParameterWrapper

setParameterId(StringProperty) - Method in class de.sbtab.containers.SBTabParameterWrapper

setParameterName(StringProperty) - Method in class de.sbtab.containers.SBTabParameterWrapper

setParameterSBOTerm(StringProperty) - Method in class de.sbtab.containers.SBTabParameterWrapper

setPreferences(String) - Method in class de.sbtab.controller.SBTabController

Set Preferences for the programm, at the moment only the file path is saved.

setReactionId(StringProperty) - Method in class de.sbtab.containers.SBTabReactionWrapper

setReactionName(StringProperty) - Method in class de.sbtab.containers.SBTabReactionWrapper

setSBOTerm(StringProperty) - Method in class de.sbtab.containers.SBTabReactionWrapper

setSpecies(Species) - Method in class de.sbtab.containers.SBTabSpeciesWrapper

setSpeciesCompartment(StringProperty) - Method in class de.sbtab.containers.SBTabSpeciesWrapper

setSpeciesId(StringProperty) - Method in class de.sbtab.containers.SBTabSpeciesWrapper

setSpeciesName(StringProperty) - Method in class de.sbtab.containers.SBTabSpeciesWrapper

setUnitDefinition(UnitDefinition) - Method in class de.sbtab.containers.SBTabUnitDefinitionWrapper

setUnitDefinitionId(StringProperty) - Method in class de.sbtab.containers.SBTabUnitDefinitionWrapper

setUnitDefinitionName(StringProperty) - Method in class de.sbtab.containers.SBTabUnitDefinitionWrapper

setViewDefault() - Method in class de.sbtab.view.SBTabMainView

setViewOnFile() - Method in class de.sbtab.view.SBTabMainView

showDefault(MouseEvent) - Method in class de.sbtab.utils.SBTabMenuBar

Shows decorated ContextMenu

SPECIES - de.sbtab.services.TableType

start(Stage) - Method in class de.sbtab.view.SBTabMainView

stringValidator(SBMLDocument) - Static method in class de.sbtab.controller.SBTabController

Validator of SBML-Files

T

TableType - Enum in de.sbtab.services

Represents a type of SBTabTable view

U

UNIT_DEFINITIONS - de.sbtab.services.TableType

updateTitle() - Method in class de.sbtab.view.SBTabMainView

V

valueOf(String) - Static method in enum de.sbtab.services.TableType

Returns the enum constant of this type with the specified name.

values() - Static method in enum de.sbtab.services.TableType

Returns an array containing the constants of this enum type, in the order they are declared.

A C D E G H I M N P R S T U V