Constant Field Values

Contents

• de.uni_halle.*

de.uni_halle.*

de.uni_halle.informatik.biodata.mp.annotation.bigg.BiGGModelAnnotator

Modifier and Type	Constant Field	Value
public static final String	GENOME_ASSEMBLY_ID_PATTERN	"^GC[AF]_[0-9]{9}\\.[0-9]+$"
public static final String	REF_SEQ_ACCESSION_NUMBER_PATTERN	"^(((AC|AP|NC|NG|NM|NP|NR|NT|NW|XM|XP|XR|YP|ZP)_\\d+)|(NZ_[A-Z]{2,4}\\d+))(\\.\\d+)?$"

de.uni_halle.informatik.biodata.mp.annotation.bigg.ext.fbc.BiGGGeneProductAnnotator

Modifier and Type	Constant Field	Value
public static final String	BIGG_GENE_ID_PATTERN	"^(G_)?([a-zA-Z][a-zA-Z0-9_]+)(?:_([a-z][a-z0-9]?))?(?:_([A-Z][A-Z0-9]?))?$"

de.uni_halle.informatik.biodata.mp.db.adb.AnnotateDBContract.Constants

Modifier and Type	Constant Field	Value
public static final String	BIGG_METABOLITE	"bigg.metabolite"
public static final String	BIGG_REACTION	"bigg.reaction"

de.uni_halle.informatik.biodata.mp.db.bigg.BiGGDBContract.Constants

Modifier and Type	Constant Field	Value
public static final String	TYPE_GENE_PRODUCT	"GENE_PRODUCT"
public static final String	TYPE_REACTION	"REACTION"
public static final String	TYPE_SPECIES	"SPECIES"

de.uni_halle.informatik.biodata.mp.io.CombineArchive

Modifier and Type	Constant Field	Value
public static final String	COMBINE_SPECIFICATION	"https://identifiers.org/combine.specifications/sbml"
public static final String	RDF_MEDIATYPE	"https://purl.org/NET/mediatypes/application/rdf+xml"

de.uni_halle.informatik.biodata.mp.logging.BundleNames

Modifier and Type	Constant Field	Value
public static final String	ANNOTATION_MESSAGES	"de.uni_halle.informatik.biodata.mp.annotation.Messages"
public static final String	BASE_MESSAGES	"de.uni_halle.informatik.biodata.mp.Messages"
public static final String	BIGG_ANNOTATION_MESSAGES	"de.uni_halle.informatik.biodata.mp.annotation.bigg.Messages"
public static final String	CLI_MESSAGES	"de.uni_halle.informatik.biodata.mp.cli.Messages"
public static final String	DB_MESSAGES	"de.uni_halle.informatik.biodata.mp.db.Messages"
public static final String	FIXING_MESSAGES	"de.uni_halle.informatik.biodata.mp.fixing.Messages"
public static final String	IO_MESSAGES	"de.uni_halle.informatik.biodata.mp.io.Messages"
public static final String	POLISHING_MESSAGES	"de.uni_halle.informatik.biodata.mp.polishing.Messages"

de.uni_halle.informatik.biodata.mp.polishing.UnitPolisher

Modifier and Type	Constant Field	Value
public static final String	GROWTH_UNIT_ID	"mmol_per_gDW_per_hr"
public static final String	GROWTH_UNIT_NAME	"Millimoles per gram (dry weight) per hour"

de.uni_halle.informatik.biodata.mp.resolver.identifiersorg.IdentifiersOrgURI

Modifier and Type	Constant Field	Value
public static final String	IDENTIFIERS_ORG_ID_PATTERN	"(https?://)?(www\\.)?identifiers\\.org/(?<prefix>.*?)/(?<id>.*)"

de.uni_halle.informatik.biodata.mp.util.ext.groups.GroupsUtils

Modifier and Type	Constant Field	Value
public static final String	SUBSYSTEM_LINK	"SUBSYSTEM_LINK"