Constant Field Values

Contents

• fern.network.*
• fern.tools.*
• org.simulator.*
• org.testsuite.*

fern.network.*

fern.network.creation.AutocatalyticNetwork

Modifier and Type	Constant Field	Value
public static final String	CATALYSTS_FIELD	"Catalysts"
public static final String	CATALYSTS_FIELD_REVERSIBLE	"CatalystsReversible"

fern.network.modification.ReversibleNetwork

Modifier and Type	Constant Field	Value
public static final String	REVERSIBLE_SUFFIX	"Reversible"

fern.network.sbml.MathTree

Modifier and Type	Constant Field	Value
public static final String	TEMP_VALUE	"SBML_SIMULATION_TEMP_VALUE"

fern.tools.*

fern.tools.gnuplot.Axes

Modifier and Type	Constant Field	Value
public static final int	Additional	2
public static final int	ThreeD	1
public static final int	TwoD	0

org.simulator.*

org.simulator.math.MatrixOperations

Modifier and Type	Constant Field	Value
public static final double	ALF	1.0E-4
public static final double	EPS	1.0E-8
public static final double	STPMX	100.0
public static final double	TINY	1.0E-20
public static final double	TOLF	1.0E-4
public static final double	TOLMIN	1.0E-6
public static final double	TOLX	1.0E-7

org.simulator.math.odes.AbstractDESSolver

Modifier and Type	Constant Field	Value
public static final String	PROGRESS	"progress"
public static final String	RESULT	"result"

org.simulator.math.odes.RosenbrockSolver

Modifier and Type	Constant Field	Value
public static final double	a21	1.544
public static final double	a31	0.9466785280815826
public static final double	a32	0.2557011698983284
public static final double	a41	3.314825187068521
public static final double	a42	2.896124015972201
public static final double	a43	0.9986419139977817
public static final double	a51	1.221224509226641
public static final double	a52	6.019134481288629
public static final double	a53	12.53708332932087
public static final double	a54	-0.687886036105895
public static final double	c2	0.386
public static final double	c21	-5.6688
public static final double	c3	0.21
public static final double	c31	-2.430093356833875
public static final double	c32	-0.2063599157091915
public static final double	c4	0.63
public static final double	c41	-0.1073529058151375
public static final double	c42	-9.594562251023355
public static final double	c43	-20.47028614809616
public static final double	c51	7.496443313967647
public static final double	c52	-10.24680431464352
public static final double	c53	-33.99990352819905
public static final double	c54	11.7089089320616
public static final double	c61	8.083246795921522
public static final double	c62	-7.981132988064893
public static final double	c63	-31.52159432874371
public static final double	c64	16.31930543123136
public static final double	c65	-6.058818238834054
public static final double	d1	0.25
public static final double	d2	0.1043
public static final double	d3	0.1035
public static final double	d4	-0.0362
public static final double	fac1	0.16666666666666666
public static final double	fac2	5.0
public static final double	gam	0.25
public static final double	PWR	0.25
public static final double	RELMIN	1.0E-12
public static final double	SAFETY	0.9

org.simulator.sbml.AddMetaInfo

Modifier and Type	Constant Field	Value
public static final String	MODEL_ID	"MODEL_ID"
public static final String	ORIG_ID	"ORIGINAL_ID"

org.simulator.sbml.ConstraintListener

Modifier and Type	Constant Field	Value
public static final String	CONSTRAINT_VIOLATION_LOG	"CONSTRAINT_VIOLATION_LOG"

org.simulator.sbml.EquationSystem

Modifier and Type	Constant Field	Value
public static final String	TEMP_VALUE	"SBML_SIMULATION_TEMP_VALUE"

org.testsuite.*

org.testsuite.SBMLTestSuiteRunnerWrapper

Modifier and Type	Constant Field	Value
public static final String	ABSOLUTE	"absolute"
public static final String	AMOUNT	"amount"
public static final String	CONCENTRATION	"concentration"
public static final String	NAN	"NaN"
public static final String	RELATIVE	"relative"
public static final String	STEPS	"steps"