org.testsuite

Class SBMLTestSuiteRunnerWrapper

java.lang.Object

org.testsuite.SBMLTestSuiteRunnerWrapper

public class SBMLTestSuiteRunnerWrapper
extends Object

Wrapper for the SBML Test Suite

The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML support provided in a software package. The SBML Test Suite consists of (1) a collection of SBML models, each with associated simulated results where appropriate; (2) a testing framework for running software tools through the suite; and (3) basic documentation on the test cases and the use of the suite. This class provides the required wrapper class used to verify tests with the SBML Test Runner.

The simulation results of SBSCL by the wrapper are stored as a CSV file in the specified output directory in SBML Test Runner. The SBML Test Runner then performs the comparison of the simulation results against the reference output and creates the distance plots comparing this results with the pre-defined results from SBML Test Suite. The comparison is performed using the criteria specified in link

Field Summary

Fields

Modifier and Type	Field and Description
static String	ABSOLUTE
static String	AMOUNT
static String	CONCENTRATION
static String	NAN
static String	RELATIVE
static String	STEPS

Constructor Summary

Constructors

Constructor and Description
SBMLTestSuiteRunnerWrapper()

Method Summary

Modifier and Type	Method and Description
static void	main(String[] args) The wrapper executes the simulation of a given SBML file and writes result to a specified CSV file.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

STEPS

public static final String STEPS

See Also:

Constant Field Values

AMOUNT

public static final String AMOUNT

See Also:

Constant Field Values

CONCENTRATION

public static final String CONCENTRATION

See Also:

Constant Field Values

ABSOLUTE

public static final String ABSOLUTE

See Also:

Constant Field Values

RELATIVE

public static final String RELATIVE

See Also:

Constant Field Values

NAN

public static final String NAN

See Also:

Constant Field Values

Constructor Detail

SBMLTestSuiteRunnerWrapper

public SBMLTestSuiteRunnerWrapper()

Method Detail

main

public static void main(String[] args)
                 throws IOException,
                        XMLStreamException,
                        org.sbml.jsbml.validator.ModelOverdeterminedException,
                        org.apache.commons.math.ode.DerivativeException

The wrapper executes the simulation of a given SBML file and writes result to a specified CSV file. The information for the wrapper is parsed via command line arguments.

Parameters:

args -

Throws:

IOException

XMLStreamException

org.sbml.jsbml.validator.ModelOverdeterminedException

org.apache.commons.math.ode.DerivativeException