fern.network

Class ArrayKineticConstantPropensityCalculator

java.lang.Object

fern.network.AbstractKineticConstantPropensityCalculator

fern.network.ArrayKineticConstantPropensityCalculator

All Implemented Interfaces:

KineticConstantPropensityCalculator, PartialDerivativePropensityCalculator, PropensityCalculator

public class ArrayKineticConstantPropensityCalculator
extends AbstractKineticConstantPropensityCalculator

Implementation of an AbstractKineticConstantPropensityCalculator which uses an array to store the constants for each reaction.

Author:

Florian Erhard

Constructor Summary

Constructors

Constructor and Description
ArrayKineticConstantPropensityCalculator(int[][] reactants, double[] constants) Create the propensity calculator with given constants and given reactant adjacency arrays

Method Summary

Modifier and Type	Method and Description
double	getConstant(int i) Gets the constant for a reaction
void	setConstant(int i, double value)

Methods inherited from class fern.network.AbstractKineticConstantPropensityCalculator

calculatePartialDerivative, calculatePropensity, getConstantFromDeterministicRateConstant

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ArrayKineticConstantPropensityCalculator

public ArrayKineticConstantPropensityCalculator(int[][] reactants,
                                                double[] constants)

Create the propensity calculator with given constants and given reactant adjacency arrays

Parameters:

reactants - array of adjacency arrays

constants - array of kinetic constants

Method Detail

getConstant

public double getConstant(int i)

Description copied from interface: KineticConstantPropensityCalculator

Gets the constant for a reaction

Parameters:

i - index of the reaction

Returns:

constant for the reaction

setConstant

public void setConstant(int i,
                        double value)