fern.network (Systems Biology Simulation Core Library (SBSCL) 2.1 API)

Interface Summary
Interface	Description
AmountManager	The `AmountManager` is one of the most important connections between a `Network` and a `Simulator`.
AnnotationManager	AnnotationManager objects are the places, where static (or quasi-static) properties of a network are stored.
ComplexDependenciesPropensityCalculator	In a SBML network, the propensities of reaction are calculated by using the kineticLaw tag, which contains a MathML expression.
KineticConstantPropensityCalculator
Network	The central interface of the whole framework.
PartialDerivativePropensityCalculator
PropensityCalculator	A `PropensityCalculator` is the way, a `Network` tells a `Simulator` how to calculate propensities for the reactions.

Class Summary
Class	Description
AbstractKineticConstantPropensityCalculator	Base implementation of a `PropensityCalculator`.
AbstractNetworkImpl	Base implementation for the `Network` interface.
AnnotationManagerImpl	Base implementation of the `AnnotationManager` interface.
ArrayKineticConstantPropensityCalculator	Implementation of an `AbstractKineticConstantPropensityCalculator` which uses an array to store the constants for each reaction.
ConstantAmountManager
DefaultAmountManager	Default implementation of an amount manager, that stores the amounts in arrays.
NetworkLoader

Package fern.network