Uses of Class
org.simulator.sbml.astnode.ASTNodeValue

Packages that use ASTNodeValue

Package	Description
org.simulator.sbml	Classes for storing and interpreting an SBML model.
org.simulator.sbml.astnode	Classes for efficient numerical treatment of equations in form of abstract syntax trees.

Uses of ASTNodeValue in org.simulator.sbml

Methods in org.simulator.sbml that return ASTNodeValue

Modifier and Type	Method and Description
ASTNodeValue	SBMLEventInProgress.getDelayObject()
ASTNodeValue	SBMLEventInProgress.getPriorityObject()
ASTNodeValue	SBMLEventInProgress.getTriggerObject()

Methods in org.simulator.sbml with parameters of type ASTNodeValue

Modifier and Type	Method and Description
void	SBMLEventInProgress.setDelayObject(ASTNodeValue delayObject) Sets the math of the delay to a specific ASTNodeObject.
void	SBMLEventInProgress.setPriorityObject(ASTNodeValue priorityObject) Sets the math of the priority to a specific ASTNodeObject.
void	SBMLEventInProgress.setTriggerObject(ASTNodeValue triggerObject) Sets the math of the trigger to a specific ASTNodeObject.

Uses of ASTNodeValue in org.simulator.sbml.astnode

Subclasses of ASTNodeValue in org.simulator.sbml.astnode

Modifier and Type	Class and Description
class	CompartmentOrParameterValue This class computes and stores values of ASTNodes that refer to a Compartment or a Parameter.
class	DivideValue This class computes and stores values of ASTNodes that refer to a division object.
class	FunctionValue This class computes and stores values of ASTNodes that refer to the application of a FunctionDefinition.
class	IntegerValue This class can compute and store the value of an integer node.
class	LocalParameterValue This class computes and stores values of ASTNodes that refer to a LocalParameter.
class	MinusValue This class can compute and store the value of a minus node.
class	NamedValue This class computes and stores values of variables occurring in a function.
class	PlusValue This class can compute and store the value of a plus node.
class	PowerValue This class can compute and store the value of a power expression.
class	ReactionValue This class computes and stores values of ASTNodes that refer to a Reaction.
class	RootFunctionValue This class computes and stores values of ASTNodes that refer to a root function.
class	SpeciesReferenceValue This class computes and stores values of ASTNodes that refer to a SpeciesReference.
class	SpeciesValue This class computes and stores values of ASTNodes that refer to a Species.
class	TimesValue This class can compute and store the value of times nodes.

Methods in org.simulator.sbml.astnode that return ASTNodeValue

Modifier and Type	Method and Description
ASTNodeValue	RuleValue.getNodeObject()

Methods in org.simulator.sbml.astnode with parameters of type ASTNodeValue

Modifier and Type	Method and Description
double	ASTNodeInterpreter.abs(ASTNodeValue userObject, double time, double delay)
boolean	ASTNodeInterpreter.and(ASTNodeValue[] children, int size, double time)
double	ASTNodeInterpreter.arccos(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.arccosh(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.arccot(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.arccoth(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.arccsc(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.arccsch(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.arcsec(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.arcsech(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.arcsin(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.arcsinh(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.arctan(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.arctanh(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.ceiling(ASTNodeValue userObject, double time, double delay)
String	ASTNodeInterpreter.compileString(ASTNodeValue child)
double	ASTNodeInterpreter.cos(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.cosh(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.cot(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.coth(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.csc(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.csch(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.delay(ASTNodeValue x, ASTNodeValue delay, String timeUnits, double time)
boolean	ASTNodeInterpreter.eq(ASTNodeValue[] children, double time)
double	ASTNodeInterpreter.exp(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.factorial(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.floor(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.frac(ASTNodeValue left, ASTNodeValue right, double time, double delay)
boolean	ASTNodeInterpreter.functionBoolean(ASTNodeValue rightChild, List<String> variables, ASTNodeValue[] children, double[] values, double time)
boolean	ASTNodeInterpreter.functionBoolean(ASTNodeValue rightChild, List<String> variables, ASTNodeValue[] children, double[] values, double time)
double	ASTNodeInterpreter.functionDouble(ASTNodeValue rightChild, List<String> variables, ASTNodeValue[] children, int nArguments, double[] values, double time, double delay)
double	ASTNodeInterpreter.functionDouble(ASTNodeValue rightChild, List<String> variables, ASTNodeValue[] children, int nArguments, double[] values, double time, double delay)
boolean	ASTNodeInterpreter.geq(ASTNodeValue[] children, double time)
boolean	ASTNodeInterpreter.gt(ASTNodeValue[] children, double time)
double	ASTNodeInterpreter.implies(ASTNodeValue antecedent, ASTNodeValue consequent, double time, double delay)
boolean	ASTNodeInterpreter.lambdaBoolean(ASTNodeValue[] children, double time)
double	ASTNodeInterpreter.lambdaDouble(ASTNodeValue[] children, double time)
boolean	ASTNodeInterpreter.leq(ASTNodeValue[] children, double time)
double	ASTNodeInterpreter.ln(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.log(ASTNodeValue left, ASTNodeValue right, double time, double delay)
double	ASTNodeInterpreter.log(ASTNodeValue userObject, double time, double delay)
boolean	ASTNodeInterpreter.lt(ASTNodeValue[] children, double time)
double	ASTNodeInterpreter.maximum(ASTNodeValue[] children, double time, double delay)
double	ASTNodeInterpreter.minimum(ASTNodeValue[] children, double time, double delay)
double	ASTNodeInterpreter.minus(ASTNodeValue[] children, int size, double time, double delay)
boolean	ASTNodeInterpreter.neq(ASTNodeValue[] children, double time)
boolean	ASTNodeInterpreter.not(ASTNodeValue node, double time)
boolean	ASTNodeInterpreter.or(ASTNodeValue[] children, double time)
double	ASTNodeInterpreter.piecewise(ASTNodeValue[] children, double time, double delay)
double	ASTNodeInterpreter.plus(ASTNodeValue[] children, int size, double time, double delay)
double	ASTNodeInterpreter.pow(ASTNodeValue left, ASTNodeValue right, double time, double delay)
double	ASTNodeInterpreter.quotient(ASTNodeValue dividend, ASTNodeValue divisor, double time, double delay)
double	ASTNodeInterpreter.remainder(ASTNodeValue dividend, ASTNodeValue divisor, double time, double delay)
double	ASTNodeInterpreter.root(ASTNodeValue rootExponent, ASTNodeValue radiant, double time, double delay)
double	ASTNodeInterpreter.root(double rootExponent, ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.sec(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.sech(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.sin(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.sinh(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.sqrt(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.tan(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.tanh(ASTNodeValue userObject, double time, double delay)
double	ASTNodeInterpreter.times(ASTNodeValue[] children, int size, double time, double delay)
double	ASTNodeInterpreter.uMinus(ASTNodeValue userObject, double time, double delay)
boolean	ASTNodeInterpreter.xor(ASTNodeValue[] children, double time)

Method parameters in org.simulator.sbml.astnode with type arguments of type ASTNodeValue

Modifier and Type	Method and Description
boolean	ASTNodeInterpreter.functionBoolean(String name, List<ASTNodeValue> children)
double	ASTNodeInterpreter.functionDouble(String functionDefinitionName, List<ASTNodeValue> args, double time)

Constructors in org.simulator.sbml.astnode with parameters of type ASTNodeValue

Constructor and Description
AssignmentRuleValue(ASTNodeValue nodeObject, int index)
AssignmentRuleValue(ASTNodeValue nodeObject, int index, org.sbml.jsbml.Species sp, int compartmentIndex, boolean hasZeroSpatialDimensions, SBMLValueHolder valueHolder, boolean isAmount) Constructor for rules that refer to a species
AssignmentRuleValue(ASTNodeValue nodeObject, String speciesReferenceID, Map<String,Double> stoichiometricCoefHash) Constructor for rules that refer to a species reference
RateRuleValue(ASTNodeValue nodeObject, int index, List<Integer> speciesIndices, SBMLValueHolder valueHolder, String variable) Constructor for a rule with a compartment as variable
RateRuleValue(ASTNodeValue nodeObject, int index, org.sbml.jsbml.Species sp, int compartmentIndex, boolean hasZeroSpatialDimensions, SBMLValueHolder valueHolder, String variable, boolean isAmount) Constructor for a rule with a species as variable
RateRuleValue(ASTNodeValue nodeObject, int index, String variable)
RuleValue(ASTNodeValue nodeObject, int index)
RuleValue(ASTNodeValue nodeObject, int index, org.sbml.jsbml.Species sp, int compartmentIndex, boolean hasZeroSpatialDimensions, SBMLValueHolder valueHolder, boolean isAmount) Constructor for rules that refer to a species.
StoichiometryValue(org.sbml.jsbml.SpeciesReference sr, int speciesRefIndex, Map<String,Double> stoichiometricCoefHash, double[] Y, ASTNodeValue stoichiometryMathValue)