Uses of Package
org.simulator.math.odes

Packages that use org.simulator.math.odes
org.simulator.math.odes The different solver classes that are all derived from AbstractDESSolver. 
org.simulator.sbml Classes for storing and interpreting an SBML model. 
org.simulator.sedml Classes for storing and interpreting an SBML model. 
 

Classes in org.simulator.math.odes used by org.simulator.math.odes
AbstractDESSolver
          This Class represents an abstract solver for event-driven DES
AdamsBashforthSolver
          This class is a wrapper for the Adams-Bashforth solver in the Apache Math Library.
AdamsMoultonSolver
          This class is a wrapper for the Adams-Moulton solver in the Apache Math Library.
AdaptiveStepsizeIntegrator
          This is an abstract class for solvers with adaptive stepsizes and given relative and absolute tolerances.
DelayValueHolder
          This interface describes a value holder that can compute values with delay.
DESSolver
          A DESSolver provides algorithm for the numerical simulation of given DESystems.
DESystem
          A differential equation system describes how to compute the rate of change at a given state of the system.
DormandPrince54Solver
          This class is a wrapper for the Dormand-Prince-54 solver in the Apache Math Library.
DormandPrince853Solver
          This class is a wrapper for the Dormand-Prince-853 solver in the Apache Math Library.
EulerMethod
          In this class the Euler method for integration a differential equation system is implemented.
EventDESystem
          This Class represents an event-driven differential equation system
EventInProgress
           This class represents a compilation of the values and execution times during simulation concerning events.
FirstOrderSolver
          This class is the superclass of the wrapper classes for the solvers of the Apache Math library.
GraggBulirschStoerSolver
          This class is a wrapper for the Gragg-Bulirsch-Stoer solver in the Apache Math Library.
HighamHall54Solver
          This class is a wrapper for the Higham-Hall-54 solver in the Apache Math Library.
MultiTable
           This data structure contains the an array of sorted time points and a matrix organized in one column per quantity for which data (measurement or simulation) are gathered.
MultiTable.Block
          A MultiTable.Block is a data structure with a two-dimensional double array of actual data together with identifiers for each column.
MultiTable.Block.Column
          A column of the MultiTable.Block matrix.
RosenbrockSolver
          An implementation of Rosenbrock's method to approximate ODE solutions.
RungeKutta_EventSolver
          Runge-Kutta method.
 

Classes in org.simulator.math.odes used by org.simulator.sbml
DelayedDESystem
          This interface describes a differential equation system containing values with a delay function.
DelayValueHolder
          This interface describes a value holder that can compute values with delay.
DESystem
          A differential equation system describes how to compute the rate of change at a given state of the system.
EventDESystem
          This Class represents an event-driven differential equation system
EventInProgress
           This class represents a compilation of the values and execution times during simulation concerning events.
FastProcessDESystem
          This interface describes differential equation systems with fast processes.
RichDESystem
          A RichDESystem is a DESystem that provides additional information besides the pure rate of change during its evaluation.
 

Classes in org.simulator.math.odes used by org.simulator.sedml
AbstractDESSolver
          This Class represents an abstract solver for event-driven DES
MultiTable
           This data structure contains the an array of sorted time points and a matrix organized in one column per quantity for which data (measurement or simulation) are gathered.