A B C D E F G H I K L M N O P Q R S T U V X Y Z

D

d1 - Static variable in class org.simulator.math.odes.RosenbrockSolver

d2 - Static variable in class org.simulator.math.odes.RosenbrockSolver

d3 - Static variable in class org.simulator.math.odes.RosenbrockSolver

d4 - Static variable in class org.simulator.math.odes.RosenbrockSolver

defaultValue - Variable in class org.simulator.math.QualityMeasure

The return value of the distance function in cases where the distance cannot be computed.

delay(ASTNodeValue, ASTNodeValue, String, double) - Method in class org.simulator.sbml.astnode.ASTNodeInterpreter

DelayedDESystem - Interface in org.simulator.math.odes

This interface describes a differential equation system containing values with a delay function.

delayObject - Variable in class org.simulator.sbml.SBMLEventInProgress

The delay math of the event

DelayValueHolder - Interface in org.simulator.math.odes

This interface describes a value holder that can compute values with delay.

denominator - Variable in class org.simulator.sbml.astnode.ASTNodeValue

The denominator of the corresponding ASTNode

DESSolver - Interface in org.simulator.math.odes

A DESSolver provides algorithm for the numerical simulation of given DESystems.

DESystem - Interface in org.simulator.math.odes

A differential equation system describes how to compute the rate of change at a given state of the system.

distance(MultiTable.Block.Column, MultiTable.Block.Column, double) - Method in class org.simulator.math.N_Metric

distance(MultiTable.Block.Column, MultiTable.Block.Column, double) - Method in class org.simulator.math.PearsonCorrelation

distance(MultiTable.Block.Column, MultiTable.Block.Column) - Method in class org.simulator.math.QualityMeasure

Returns the distance of the two vectors x and y where the currently set root is used.

distance(MultiTable.Block.Column, MultiTable.Block.Column, double) - Method in class org.simulator.math.QualityMeasure

Returns the distance of the two vectors x and y with the given root.

distance(MultiTable, MultiTable) - Method in class org.simulator.math.QualityMeasure

distance(MultiTable.Block, MultiTable.Block) - Method in class org.simulator.math.QualityMeasure

distance(MultiTable.Block.Column, MultiTable.Block.Column, double) - Method in class org.simulator.math.Relative_N_Metric

DistanceSum - Class in org.simulator.math

Sets the overall distance to the sum of the column distances.

DistanceSum() - Constructor for class org.simulator.math.DistanceSum

distanceToZero(MultiTable.Block.Column, double) - Method in class org.simulator.math.N_Metric

DivideValue - Class in org.simulator.sbml.astnode

This class computes and stores values of ASTNodes that refer to a division object.

DivideValue(ASTNodeInterpreter, ASTNode) - Constructor for class org.simulator.sbml.astnode.DivideValue

DormandPrince54Solver - Class in org.simulator.math.odes

This class is a wrapper for the Dormand-Prince-54 solver in the Apache Math Library.

DormandPrince54Solver() - Constructor for class org.simulator.math.odes.DormandPrince54Solver

default constructor

DormandPrince54Solver(DormandPrince54Solver) - Constructor for class org.simulator.math.odes.DormandPrince54Solver

clone constructor

DormandPrince54Solver(double) - Constructor for class org.simulator.math.odes.DormandPrince54Solver

DormandPrince54Solver(double, boolean) - Constructor for class org.simulator.math.odes.DormandPrince54Solver

DormandPrince853Solver - Class in org.simulator.math.odes

This class is a wrapper for the Dormand-Prince-853 solver in the Apache Math Library.

DormandPrince853Solver() - Constructor for class org.simulator.math.odes.DormandPrince853Solver

default constructor

DormandPrince853Solver(DormandPrince853Solver) - Constructor for class org.simulator.math.odes.DormandPrince853Solver

clone constructor

DormandPrince853Solver(double) - Constructor for class org.simulator.math.odes.DormandPrince853Solver

DormandPrince853Solver(double, boolean) - Constructor for class org.simulator.math.odes.DormandPrince853Solver

doubleValue - Variable in class org.simulator.sbml.astnode.ASTNodeValue

Double value of the node (if the type of the value is double)