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I

id - Variable in class org.simulator.sbml.astnode.CompartmentOrParameterValue
The id of the compartment or parameter.
id - Variable in class org.simulator.sbml.astnode.SpeciesValue
The id of the species
inBetweenSteps(double, double, double) - Method in class org.simulator.math.odes.AbstractDESSolver
Computes the number of necessary steps between two time steps.
index - Variable in class org.simulator.sbml.astnode.RuleValue
The index of the variable in the Y vector of the value holder
indexMap - Variable in class org.simulator.sbml.astnode.FunctionValue
A map for storing the indexes of the arguments in the array argumentValues.
init() - Method in class org.simulator.sbml.SBMLinterpreter
This method initializes the differential equation system for simulation.
init(boolean) - Method in class org.simulator.sbml.SBMLinterpreter
This method initializes the differential equation system for simulation.
init(boolean, double, double, double) - Method in class org.simulator.sbml.SBMLinterpreter
This method initializes the differential equation system for simulation.
init(boolean, double, double, double, Map<String, Boolean>) - Method in class org.simulator.sbml.SBMLinterpreter
This method initializes the differential equation system for simulation.
initialValues - Variable in class org.simulator.sbml.SBMLinterpreter
An array, which stores all computed initial values of the model.
initResultMatrix(DESystem, double[], double, double) - Method in class org.simulator.math.odes.AbstractDESSolver
 
initResultMatrix(DESystem, double[], double, int) - Method in class org.simulator.math.odes.AbstractDESSolver
 
initResultMatrix(DESystem, double[], double[]) - Method in class org.simulator.math.odes.AbstractDESSolver
 
IntegerValue - Class in org.simulator.sbml.astnode
This class can compute and store the value of an integer node.
IntegerValue(ASTNodeInterpreter, ASTNode) - Constructor for class org.simulator.sbml.astnode.IntegerValue
 
integrator - Variable in class org.simulator.math.odes.FirstOrderSolver
The integrator used.
interpreter - Variable in class org.simulator.sbml.astnode.ASTNodeValue
The interpreter for calculating the value
isAmount - Variable in class org.simulator.sbml.astnode.SpeciesValue
Is the Y value of the species referring to an amount?
isCellEditable(int, int) - Method in class org.simulator.math.odes.MultiTable
 
isConstant - Variable in class org.simulator.sbml.astnode.ASTNodeValue
Flag that is true if the value of the ASTNode is constant.
isDouble - Variable in class org.simulator.sbml.astnode.ASTNodeValue
Flag that is true if the value has double as type and false if the value is boolean
isIncludeIntermediates() - Method in class org.simulator.math.odes.AbstractDESSolver
 
isIncludeIntermediates() - Method in interface org.simulator.math.odes.DESSolver
If this method returns true, intermediate results that may originate from a RichDESystem are included into the MultiTable that contains the result of a numerical integration.
isInfinite - Variable in class org.simulator.sbml.astnode.ASTNodeValue
Flag that is true if the value is positive/negative infinity
isName() - Method in class org.simulator.sbml.astnode.ASTNodeValue
Returns true if the corresponding ASTNode is of type name.
isNonnegative() - Method in class org.simulator.math.odes.AbstractDESSolver
 
isSetData() - Method in class org.simulator.math.odes.MultiTable.Block
Checks whether or not a data matrix has been defined in this object
isSetInitialAmount - Variable in class org.simulator.sbml.astnode.RuleValue
The isSetInitialAmount attribute of the species (if applicable)
isSetInitialConcentration - Variable in class org.simulator.sbml.astnode.RuleValue
The isSetInitialConcentration attribute of the species (if applicable)
isSetInitialConcentration - Variable in class org.simulator.sbml.astnode.SpeciesValue
Has the species an initial concentration set?
isSetTimePoints() - Method in class org.simulator.math.odes.MultiTable
Checks whether an array of time points has been set for this object.
isSpecies - Variable in class org.simulator.sbml.astnode.RuleValue
Flag that is true if the variable is referring to a species, otherwise false
isUnstable() - Method in class org.simulator.math.odes.AbstractDESSolver
 
isUnstable() - Method in interface org.simulator.math.odes.DESSolver
Method to check whether the solution of the numerical integration procedure contains Double.NaN values.
iterator() - Method in class org.simulator.math.odes.MultiTable.Block.Column
 
iterator() - Method in class org.simulator.math.odes.MultiTable
 

Generated at April 19 2013
Version 1.3 Revision 424
A B C D E F G H I K L M N O P Q R S T U V X Y Z