A B C D E F G H I K L M N O P Q R S T U V X Y Z

I

id - Variable in class org.simulator.sbml.astnode.CompartmentOrParameterValue

The id of the compartment or parameter.

id - Variable in class org.simulator.sbml.astnode.SpeciesValue

The id of the species

inBetweenSteps(double, double, double) - Method in class org.simulator.math.odes.AbstractDESSolver

Computes the number of necessary steps between two time steps.

index - Variable in class org.simulator.sbml.astnode.RuleValue

The index of the variable in the Y vector of the value holder

indexMap - Variable in class org.simulator.sbml.astnode.FunctionValue

A map for storing the indexes of the arguments in the array argumentValues.

init() - Method in class org.simulator.sbml.SBMLinterpreter

This method initializes the differential equation system for simulation.

init(boolean) - Method in class org.simulator.sbml.SBMLinterpreter

This method initializes the differential equation system for simulation.

init(boolean, double, double, double) - Method in class org.simulator.sbml.SBMLinterpreter

This method initializes the differential equation system for simulation.

init(boolean, double, double, double, Map<String, Boolean>) - Method in class org.simulator.sbml.SBMLinterpreter

This method initializes the differential equation system for simulation.

initialValues - Variable in class org.simulator.sbml.SBMLinterpreter

An array, which stores all computed initial values of the model.

initResultMatrix(DESystem, double[], double, double) - Method in class org.simulator.math.odes.AbstractDESSolver

initResultMatrix(DESystem, double[], double, int) - Method in class org.simulator.math.odes.AbstractDESSolver

initResultMatrix(DESystem, double[], double[]) - Method in class org.simulator.math.odes.AbstractDESSolver

IntegerValue - Class in org.simulator.sbml.astnode

This class can compute and store the value of an integer node.

IntegerValue(ASTNodeInterpreter, ASTNode) - Constructor for class org.simulator.sbml.astnode.IntegerValue

integrator - Variable in class org.simulator.math.odes.FirstOrderSolver

The integrator used.

interpreter - Variable in class org.simulator.sbml.astnode.ASTNodeValue

The interpreter for calculating the value

isAmount - Variable in class org.simulator.sbml.astnode.SpeciesValue

Is the Y value of the species referring to an amount?

isCellEditable(int, int) - Method in class org.simulator.math.odes.MultiTable

isConstant - Variable in class org.simulator.sbml.astnode.ASTNodeValue

Flag that is true if the value of the ASTNode is constant.

isDouble - Variable in class org.simulator.sbml.astnode.ASTNodeValue

Flag that is true if the value has double as type and false if the value is boolean

isIncludeIntermediates() - Method in class org.simulator.math.odes.AbstractDESSolver

isIncludeIntermediates() - Method in interface org.simulator.math.odes.DESSolver

If this method returns true, intermediate results that may originate from a RichDESystem are included into the MultiTable that contains the result of a numerical integration.

isInfinite - Variable in class org.simulator.sbml.astnode.ASTNodeValue

Flag that is true if the value is positive/negative infinity

isName() - Method in class org.simulator.sbml.astnode.ASTNodeValue

Returns true if the corresponding ASTNode is of type name.

isNonnegative() - Method in class org.simulator.math.odes.AbstractDESSolver

isSetData() - Method in class org.simulator.math.odes.MultiTable.Block

Checks whether or not a data matrix has been defined in this object

isSetInitialAmount - Variable in class org.simulator.sbml.astnode.RuleValue

The isSetInitialAmount attribute of the species (if applicable)

isSetInitialConcentration - Variable in class org.simulator.sbml.astnode.RuleValue

The isSetInitialConcentration attribute of the species (if applicable)

isSetInitialConcentration - Variable in class org.simulator.sbml.astnode.SpeciesValue

Has the species an initial concentration set?

isSetTimePoints() - Method in class org.simulator.math.odes.MultiTable

Checks whether an array of time points has been set for this object.

isSpecies - Variable in class org.simulator.sbml.astnode.RuleValue

Flag that is true if the variable is referring to a species, otherwise false

isUnstable() - Method in class org.simulator.math.odes.AbstractDESSolver

isUnstable() - Method in interface org.simulator.math.odes.DESSolver

Method to check whether the solution of the numerical integration procedure contains Double.NaN values.

iterator() - Method in class org.simulator.math.odes.MultiTable.Block.Column

iterator() - Method in class org.simulator.math.odes.MultiTable