A B C D E F G H I K L M N O P Q R S T U V X Y Z

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tan(ASTNodeValue, double, double) - Method in class org.simulator.sbml.astnode.ASTNodeInterpreter

tanh(ASTNodeValue, double, double) - Method in class org.simulator.sbml.astnode.ASTNodeInterpreter

tearDown() - Method in class org.simulator.sedml.SEDMLExecutorTest

tearDown() - Method in class org.simulator.sedml.SEDMLWriterTest

TEMP_VALUE - Static variable in class org.simulator.sbml.SBMLinterpreter

Key to memorize user objects in ASTNode

testBasicSEDMLExecutorForLocalFile() - Method in class org.simulator.sedml.SEDMLExecutorTest

testBasicSEDMLExecutorForMiriamURNDefinedModel() - Method in class org.simulator.sedml.SEDMLExecutorTest

retrieves model from Miriam DB - needs internet connection

TestBiomodels - Class in org.simulator

This class can test the simulation of all models from BioModels database.

TestBiomodels() - Constructor for class org.simulator.TestBiomodels

testBiomodels(String, int, int) - Static method in class org.simulator.TestBiomodels

Tests the models of biomodels.org using the RosenbrockSolver as integrator

testModel(AbstractDESSolver, Model, double[], double, Map<String, Boolean>) - Static method in class org.simulator.SBMLTestSuiteRunner

Tests one specific model

testModels() - Method in class org.simulator.SBMLTestSuiteRunner

Tests the models of the SBML test suite using Rosenbrock as integrator TEST_CASES must be set to the address of the folder "semantic" in the SBML test suite.

testRosenbrockSolver(String, int, int) - Static method in class org.simulator.SBMLTestSuiteRunner

Computes a statistic for the SBML test suite using the Rosenbrock solver as integrator

testRosenbrockSolver(String, int, String, int, int) - Static method in class org.simulator.SBMLTestSuiteWrapper

Computes a statistic for the SBML test suite using the RosenbrockSolver as integrator

testRosenbrockSolverWithSEDML(String, int, int) - Static method in class org.simulator.SBMLTestSuiteRunner

Computes a statistic for the SBML test suite using the Rosenbrock solver as integrator and the SED-ML files

testSaveExperimentToSEDML() - Method in class org.simulator.sedml.SEDMLWriterTest

time - Variable in class org.simulator.sbml.astnode.ASTNodeValue

The time of the last computation

times(ASTNodeValue[], int, double, double) - Method in class org.simulator.sbml.astnode.ASTNodeInterpreter

TimesValue - Class in org.simulator.sbml.astnode

This class can compute and store the value of times nodes.

TimesValue(ASTNodeInterpreter, ASTNode) - Constructor for class org.simulator.sbml.astnode.TimesValue

Initializes a new instance with the interpreter and ASTNode given

TINY - Static variable in class org.simulator.math.MatrixOperations

Extremely small value.

TOLF - Static variable in class org.simulator.math.MatrixOperations

Convergence criterion on function values

TOLMIN - Static variable in class org.simulator.math.MatrixOperations

Criterion deciding whether spurious convergence to a minimum of min

TOLX - Static variable in class org.simulator.math.MatrixOperations

Convergence criterion on delta X

toString() - Method in class org.simulator.math.odes.MultiTable.Block.Column

toString() - Method in class org.simulator.math.odes.MultiTable.Block

toString() - Method in class org.simulator.math.odes.MultiTable

toString(ASTNode) - Method in class org.simulator.sbml.astnode.ASTNodeInterpreter

triggerObject - Variable in class org.simulator.sbml.SBMLEventInProgress

The trigger of the event