Uses of Interface
fern.network.PropensityCalculator

Packages that use PropensityCalculator

Package	Description
fern.network
fern.network.creation
fern.network.modification
fern.network.sbml
fern.simulation

Uses of PropensityCalculator in fern.network

Subinterfaces of PropensityCalculator in fern.network

Modifier and Type	Interface and Description
interface	ComplexDependenciesPropensityCalculator In a SBML network, the propensities of reaction are calculated by using the kineticLaw tag, which contains a MathML expression.
interface	KineticConstantPropensityCalculator
interface	PartialDerivativePropensityCalculator

Classes in fern.network that implement PropensityCalculator

Modifier and Type	Class and Description
class	AbstractKineticConstantPropensityCalculator Base implementation of a PropensityCalculator.
class	ArrayKineticConstantPropensityCalculator Implementation of an AbstractKineticConstantPropensityCalculator which uses an array to store the constants for each reaction.

Methods in fern.network that return PropensityCalculator

Modifier and Type	Method and Description
PropensityCalculator	Network.getPropensityCalculator() Gets the PropensityCalculator for this network.
PropensityCalculator	AbstractNetworkImpl.getPropensityCalculator()

Uses of PropensityCalculator in fern.network.creation

Methods in fern.network.creation that return PropensityCalculator

Modifier and Type	Method and Description
PropensityCalculator	AutocatalyticNetwork.getReversePropensityCalculator() Gets the PropensityCalculator which has to be used for instantiation of the ReversibleNetwork.

Uses of PropensityCalculator in fern.network.modification

Methods in fern.network.modification that return PropensityCalculator

Modifier and Type	Method and Description
PropensityCalculator	ModifierNetwork.getPropensityCalculator() Gets the PropensityCalculator of the original network.
PropensityCalculator	ReversibleNetwork.getPropensityCalculator() Gets the PropensityCalculator for the modified network.
PropensityCalculator	CatalysedNetwork.getPropensityCalculator()
PropensityCalculator	ExtractSubNetwork.getPropensityCalculator() Gets the PropensityCalculator for the extracted subnet.

Constructors in fern.network.modification with parameters of type PropensityCalculator

Constructor and Description
ReversibleNetwork(Network originalNet, PropensityCalculator reversiblePropensityCalculator) Creates a new network from an original network and virtually creates for each reaction a new inverse reaction.

Uses of PropensityCalculator in fern.network.sbml

Classes in fern.network.sbml that implement PropensityCalculator

Modifier and Type	Class and Description
class	SBMLPropensityCalculator Propensity calculator which is used for SBMLNetworks.

Uses of PropensityCalculator in fern.simulation

Methods in fern.simulation that return PropensityCalculator

Modifier and Type	Method and Description
PropensityCalculator	Simulator.getPropensityCalculator() Gets the PropensityCalculator.