Uses of Package
org.simulator.math.odes

Packages that use org.simulator.math.odes

Package	Description
org.simulator.comp
org.simulator.io	Import and export of files.
org.simulator.math	Classes that contain several mathematical operations.
org.simulator.math.odes	The various solver classes that are all derived from AbstractDESSolver.
org.simulator.plot
org.simulator.sbml	Classes for storing and interpreting an SBML model.
org.simulator.sedml	Classes for reading and executing SED-ML files.

Classes in org.simulator.math.odes used by org.simulator.comp

Class and Description
DESSolver A DESSolver provides algorithm for the numerical simulation of given DESystems.
MultiTable This data structure contains the an array of sorted time points and a matrix organized in one column per quantity for which data (measurement or simulation) are gathered.

Classes in org.simulator.math.odes used by org.simulator.io

Class and Description
MultiTable This data structure contains the an array of sorted time points and a matrix organized in one column per quantity for which data (measurement or simulation) are gathered.

Classes in org.simulator.math.odes used by org.simulator.math

Class and Description
MultiTable This data structure contains the an array of sorted time points and a matrix organized in one column per quantity for which data (measurement or simulation) are gathered.
MultiTable.Block.Column A column of the MultiTable.Block matrix.

Classes in org.simulator.math.odes used by org.simulator.math.odes

Class and Description
AbstractDESSolver This Class represents an abstract solver for event-driven DES
AdamsBashforthSolver This class is a wrapper for the Adams-Bashforth solver in the Apache Math Library.
AdamsMoultonSolver This class is a wrapper for the Adams-Moulton solver in the Apache Math Library.
AdaptiveStepsizeIntegrator This is an abstract class for solvers with adaptive stepsizes and given relative and absolute tolerances.
DelayValueHolder This interface describes a value holder that can compute values with delay.
DESSolver A DESSolver provides algorithm for the numerical simulation of given DESystems.
DESystem A differential equation system describes how to compute the rate of change at a given state of the system.
DormandPrince54Solver This class is a wrapper for the Dormand-Prince-54 solver in the Apache Math Library.
DormandPrince853Solver This class is a wrapper for the Dormand-Prince-853 solver in the Apache Math Library.
EulerMethod In this class the Euler method for integration a differential equation system is implemented.
EventDESystem This class represents an event-driven differential equation system
EventInProgress This class represents a compilation of the values and execution times during simulation concerning events.
FirstOrderSolver This class is the superclass of the wrapper classes for the solvers of the Apache Math Library.
GraggBulirschStoerSolver This class is a wrapper for the Gragg-Bulirsch-Stoer solver in the Apache Math Library.
HighamHall54Solver This class is a wrapper for the Higham-Hall-54 solver in the Apache Math Library.
MultiTable This data structure contains the an array of sorted time points and a matrix organized in one column per quantity for which data (measurement or simulation) are gathered.
MultiTable.Block A MultiTable.Block is a data structure with a two-dimensional double array of actual data together with identifiers for each column.
MultiTable.Block.Column A column of the MultiTable.Block matrix.
RosenbrockSolver An implementation of Rosenbrock's method to approximate ODE solutions.
RungeKutta_EventSolver Runge-Kutta method.

Classes in org.simulator.math.odes used by org.simulator.plot

Class and Description
MultiTable This data structure contains the an array of sorted time points and a matrix organized in one column per quantity for which data (measurement or simulation) are gathered.

Classes in org.simulator.math.odes used by org.simulator.sbml

Class and Description
DelayedDESystem This interface describes a differential equation system containing values with a delay function.
DelayValueHolder This interface describes a value holder that can compute values with delay.
DESystem A differential equation system describes how to compute the rate of change at a given state of the system.
EventDESystem This class represents an event-driven differential equation system
EventInProgress This class represents a compilation of the values and execution times during simulation concerning events.
FastProcessDESystem This interface describes differential equation systems with fast processes.
RichDESystem A RichDESystem is a DESystem that provides additional information besides the pure rate of change during its evaluation.

Classes in org.simulator.math.odes used by org.simulator.sedml

Class and Description
AbstractDESSolver This Class represents an abstract solver for event-driven DES
MultiTable This data structure contains the an array of sorted time points and a matrix organized in one column per quantity for which data (measurement or simulation) are gathered.