Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV LETTER
NEXT LETTER
FRAMES
NO FRAMES
All Classes
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
R
S
T
U
V
X
Y
Z
P
persistent
- Variable in class org.simulator.sbml.
EventInProcess
piecewise(List<ASTNodeObject>, double)
- Method in class org.simulator.sbml.astnode.
ASTNodeInterpreterWithTime
piecewise(List<ASTNode>)
- Method in class org.simulator.sbml.
ASTNodeInterpreter
piecewise(List<ASTNode>)
- Method in class org.simulator.sbml.
EfficientASTNodeInterpreter
plus(List<ASTNodeObject>, int, double)
- Method in class org.simulator.sbml.astnode.
ASTNodeInterpreterWithTime
plus(List<ASTNode>)
- Method in class org.simulator.sbml.
ASTNodeInterpreter
plus(List<ASTNode>)
- Method in class org.simulator.sbml.
EfficientASTNodeInterpreter
position
- Variable in class org.simulator.sbml.astnode.
CompartmentOrParameterValue
The position of the current compartment/parameter value in the Y vector of the value holder
position
- Variable in class org.simulator.sbml.astnode.
SpeciesValue
The position of the species value in the Y vector of the value holder
pow(ASTNodeObject, ASTNodeObject, double)
- Method in class org.simulator.sbml.astnode.
ASTNodeInterpreterWithTime
pow(ASTNode, ASTNode)
- Method in class org.simulator.sbml.
ASTNodeInterpreter
pow(ASTNode, ASTNode)
- Method in class org.simulator.sbml.
EfficientASTNodeInterpreter
priority
- Variable in class org.simulator.sbml.
EventInProcess
priorityObject
- Variable in class org.simulator.sbml.
EventInProcess
processAssignmentRules(double, double[])
- Method in interface org.simulator.math.odes.
EventDESystem
processAssignmentRules(double, double[])
- Method in class org.simulator.sbml.
SBMLinterpreter
processAssignmentVariable(double)
- Method in class org.simulator.sbml.astnode.
RuleObject
Calculates the math of the rule and returns the new value of the variable.
processEvents(EventDESystem, double, double, double[])
- Method in class org.simulator.math.odes.
AbstractDESSolver
Processes sudden changes in the system due to events in the EDES
processEventsAndRules(boolean, DESystem, double, double, double[])
- Method in class org.simulator.math.odes.
AbstractDESSolver
Function for processing the events and rules at a certain time step.
processInitialAssignments(double, double[])
- Method in class org.simulator.sbml.
SBMLinterpreter
Processes the initial assignments
processRule(double[], double, boolean)
- Method in class org.simulator.sbml.astnode.
AssignmentRuleObject
Processes the rule and saves the new value of the corresponding variable in the Y vector if changeY is set to true.
processRule(double[], double[], double)
- Method in class org.simulator.sbml.astnode.
RateRuleObject
Processes the rule and saves the new value of the corresponding variable in the changeRate vector.
processRules(EventDESystem, double, double[])
- Method in class org.simulator.math.odes.
AbstractDESSolver
Function for processing the rules at a certain time step.
processRules(double, double[], double[], boolean)
- Method in class org.simulator.sbml.
SBMLinterpreter
Processes the rules
processVelocities(double[], double)
- Method in class org.simulator.sbml.
SBMLinterpreter
This method computes the multiplication of the stoichiometric matrix of the given model system with the reaction velocities vector passed to this method.
propertyChange(PropertyChangeEvent)
- Method in class org.simulator.sbml.astnode.
LocalParameterValue
PWR
- Static variable in class org.simulator.math.odes.
RosenbrockSolver
Constants used to adapt the stepsize according to the error in the last step (see rodas.f)
Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV LETTER
NEXT LETTER
FRAMES
NO FRAMES
All Classes
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
R
S
T
U
V
X
Y
Z