Uses of Interface
org.simulator.sbml.ValueHolder

Packages that use ValueHolder

org.simulator.sbml
org.simulator.sbml.astnode	Classes for efficient numerical treatment of equations in form of abstract syntax trees.

Uses of ValueHolder in org.simulator.sbml

Classes in org.simulator.sbml that implement ValueHolder

class

SBMLinterpreter This DifferentialEquationSystem takes a model in SBML format and maps it to a data structure that is understood by the AbstractDESSolver.

Constructors in org.simulator.sbml with parameters of type ValueHolder

ASTNodeInterpreter(ValueHolder valueHolder)
Constructs an interpreter with a special value holder.

EfficientASTNodeInterpreter(ValueHolder valueHolder)
Constructs an interpreter with a specific value holder.

Uses of ValueHolder in org.simulator.sbml.astnode

Fields in org.simulator.sbml.astnode declared as ValueHolder

protected ValueHolder	StoichiometryObject.valueHolder The value holder that stores the current simulation results.
protected ValueHolder	SpeciesValue.valueHolder The value holder that stores the current simulation results
protected ValueHolder	RuleObject.valueHolder The value holder that stores the current simulation results
protected ValueHolder	CompartmentOrParameterValue.valueHolder The value holder that stores the current simulation results.

Constructors in org.simulator.sbml.astnode with parameters of type ValueHolder

AssignmentRuleObject(ASTNodeObject nodeObject, int index, org.sbml.jsbml.Species sp, int compartmentIndex, boolean hasZeroSpatialDimensions, ValueHolder valueHolder)
Constructor for rules that refer to a species

ASTNodeInterpreterWithTime(ValueHolder valueHolder)

CompartmentOrParameterValue(ASTNodeInterpreterWithTime interpreter, org.sbml.jsbml.ASTNode node, org.sbml.jsbml.Symbol sb, ValueHolder valueHolder, int position)

RateRuleObject(ASTNodeObject nodeObject, int index, java.util.List<java.lang.Integer> speciesIndices, ValueHolder valueHolder)
Constructor for a rule with a compartment as variable

RateRuleObject(ASTNodeObject nodeObject, int index, org.sbml.jsbml.Species sp, int compartmentIndex, boolean hasZeroSpatialDimensions, ValueHolder valueHolder)
Constructor for a rule with a species as variable

RuleObject(ASTNodeObject nodeObject, int index, org.sbml.jsbml.Species sp, int compartmentIndex, boolean hasZeroSpatialDimensions, ValueHolder valueHolder)
Constructor for rules that refer to a species.

SpeciesReferenceValue(ASTNodeInterpreterWithTime interpreter, org.sbml.jsbml.ASTNode node, org.sbml.jsbml.SpeciesReference sr, ValueHolder valueHolder)

SpeciesValue(ASTNodeInterpreterWithTime interpreter, org.sbml.jsbml.ASTNode node, org.sbml.jsbml.Species s, ValueHolder valueHolder, int position, int compartmentPosition, boolean zeroSpatialDimensions)

StoichiometryObject(org.sbml.jsbml.SpeciesReference sr, int speciesIndex, int speciesRefIndex, int compartmentIndex, java.util.Map<java.lang.String,java.lang.Double> stoichiometricCoefHash, ValueHolder valueHolder, double[] Y, EfficientASTNodeInterpreter nodeInterpreter, int reactionIndex, java.util.Set<java.lang.String> inConcentrationSet, boolean isReactant)