A B C D E F G H I K L M N O P R S T U V X Y Z

M

main(String[]) - Static method in class org.simulator.About

main(String[]) - Static method in class org.simulator.SimulatorTest

Starts a simulation at the command line.

mantissa - Variable in class org.simulator.sbml.astnode.ASTNodeValue

The mantissa of the corresponding ASTNode

math - Variable in class org.simulator.sbml.astnode.FunctionValue

The math of the function definition.

Mathematics - Class in org.simulator.math

This class contains a collection of mathematical functions like the faculty, logarithms and several trigonometric functions.

Mathematics() - Constructor for class org.simulator.math.Mathematics

MatrixOperations - Class in org.simulator.math

Class used to perform matrix operations, focusing on finding vector solutions to the vector equation F(x) = 0.

MatrixOperations() - Constructor for class org.simulator.math.MatrixOperations

MatrixOperations.MatrixException - Exception in org.simulator.math

This exception is thrown when errors in the computation of matrix-related solutions, their eigenvalues or eigenvectors.

MatrixOperations.MatrixException() - Constructor for exception org.simulator.math.MatrixOperations.MatrixException

Constructor for MatrixException

MatrixOperations.MatrixException(String) - Constructor for exception org.simulator.math.MatrixOperations.MatrixException

Constructor for MatrixException with message

min(int, int, int) - Static method in class org.simulator.math.Mathematics

This just computes the minimum of three integer values.

minus(List<ASTNodeValue>, int, double) - Method in class org.simulator.sbml.astnode.ASTNodeInterpreter

model - Variable in class org.simulator.sbml.SBMLinterpreter

The model to be simulated.

MultiTable - Class in org.simulator.math.odes

This data structure contains the an array of sorted time points and a matrix organized in one column per quantity for which data (measurement or simulation) are gathered.

MultiTable() - Constructor for class org.simulator.math.odes.MultiTable

Constructs an empty MultiTable object.

MultiTable(double[], double[][], String[]) - Constructor for class org.simulator.math.odes.MultiTable

Constructs a data object for the given values.

MultiTable(double[], double[][], String[], String[]) - Constructor for class org.simulator.math.odes.MultiTable

MultiTable.Block - Class in org.simulator.math.odes

A MultiTable.Block is a data structure with a two-dimensional double array of actual data together with identifiers for each column.

MultiTable.Block.Column - Class in org.simulator.math.odes

A column of the MultiTable.Block matrix.

MultTableSEDMLWrapper - Class in org.simulator.sedml

This class adapts the native results to an interface that the SEDML processor can use to post-process results.

MultTableSEDMLWrapper(MultiTable) - Constructor for class org.simulator.sedml.MultTableSEDMLWrapper