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elmhes(double[][])
- Static method in class org.simulator.math.
MatrixOperations
Reduces a[1..n][1..n] to upper Hessenberg form
EPS
- Static variable in class org.simulator.math.
MatrixOperations
Approximate square root of the JVM precision
eq(ASTNodeValue, ASTNodeValue, double)
- Method in class org.simulator.sbml.astnode.
ASTNodeInterpreter
EulerMethod
- Class in
org.simulator.math.odes
In this class the Euler method for integration a differential equation system is implemented.
EulerMethod()
- Constructor for class org.simulator.math.odes.
EulerMethod
default constructor
EulerMethod(double)
- Constructor for class org.simulator.math.odes.
EulerMethod
EulerMethod(double, boolean)
- Constructor for class org.simulator.math.odes.
EulerMethod
EulerMethod(EulerMethod)
- Constructor for class org.simulator.math.odes.
EulerMethod
clone constructor
evaluationBlock
- Variable in class org.simulator.sbml.astnode.
FunctionValue
The value of the evaluation block of the function stored in an ASTNodeObject.
EventDESystem
- Interface in
org.simulator.math.odes
This Class represents an event-driven differential equation system
EventInProgress
- Class in
org.simulator.math.odes
This class represents a compilation of the values and execution times during simulation concerning events.
EventInProgress(boolean)
- Constructor for class org.simulator.math.odes.
EventInProgress
Creates a new EventInProcess with the given boolean value indicating whether or not it can fire at the initial time point.
eventOccurred(double, double[], boolean)
- Method in class org.simulator.math.odes.
AbstractDESSolver
execTimes
- Variable in class org.simulator.math.odes.
EventInProgress
execute(String, InputStream)
- Method in class org.simulator.sedml.
SEDMLExecutor
EXecutes a SEDML file to produce the specified output.
executed(double)
- Method in class org.simulator.math.odes.
EventInProgress
The event associated with this class has been executed therefore reset some values.
executed(double)
- Method in class org.simulator.sbml.
SBMLEventInProgressWithDelay
executeSedML(InputStream)
- Method in class org.simulator.sedml.
SEDMLWriter
executeSimulation(String, UniformTimeCourse)
- Method in class org.simulator.sedml.
SedMLSBMLSimulatorExecutor
This method performs the actual simulation, using the model and simulation configuration that are passed in as arguments.
ExecutionException
- Exception in
org.simulator.sedml
Runtime exception indicating that SEDML execution has failed.
ExecutionException(String)
- Constructor for exception org.simulator.sedml.
ExecutionException
exp(ASTNodeValue, double)
- Method in class org.simulator.sbml.astnode.
ASTNodeInterpreter
exponent
- Variable in class org.simulator.sbml.astnode.
ASTNodeValue
The exponent of the corresponding ASTNode
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